Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1148 ATGATGATTGCAGAGAGAAAGAGGAAGAATCAATATAGGGGAATTCGTCAACGTCCTTGGGGGAAATGGGCAGCTNAAATCAGGGACCCAAGAAAGGGCGTTCGTGTCTGGCTTGGAACCTTCAACACTGCTGAAGAAGCAGCAAGAGCTTATGATGCTGAGGCACGGAGGATTCGTGGCAATAAAGCCAAGGTGAATTTCCCTGAAGAAGCTTCCGTGAAATGTTCCAAGTTAAATCCACTGGGAAATCGGAAGATTGTTCAACCCAATGTTCACAAGTTCAATGCTGGGAACAATCAGAACGACCTTCGTTGGCCTATGGATCTGGTGGAACAGAAACCCCTAGTTAATCAGTTTGTTGACATGGGTTCCTTCCCCGACAGTGGAAATGGGCTCAGATCTCTGCCTTCGACTAATAATGTGACCCTTCGCAATAACGATTCGCCCTGTGCCGGAAAATCCCAATCAAGATGA 474 0.4684 MMIAERKRKNQYRGIRQRPWGKWAAXIRDPRKGVRVWLGTFNTAEEAARAYDAEARRIRGNKAKVNFPEEASVKCSKLNPLGNRKIVQPNVHKFNAGNNQNDLRWPMDLVEQKPLVNQFVDMGSFPDSGNGLRSLPSTNNVTLRNNDSPCAGKSQSR* 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1148 157 MobiDBLite consensus disorder prediction 130 157 - -
Vra9g1148 157 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Vra9g1148 157 PANTHER EREBP TRANSCRIPTION FACTOR 4 147 - -
Vra9g1148 157 CDD AP2 11 69 IPR001471 GO:0003700|GO:0006355
Vra9g1148 157 SMART rav1_2 11 74 IPR001471 GO:0003700|GO:0006355
Vra9g1148 157 MobiDBLite consensus disorder prediction 126 157 - -
Vra9g1148 157 Pfam AP2 domain 11 60 IPR001471 GO:0003700|GO:0006355
Vra9g1148 157 SUPERFAMILY DNA-binding domain 11 69 IPR016177 GO:0003677
Vra9g1148 157 ProSiteProfiles AP2/ERF domain profile. 11 68 IPR001471 GO:0003700|GO:0006355
Vra9g1148 157 PANTHER DNA-BINDING DOMAIN 4 147 IPR044808 GO:0003700|GO:0009873
Vra9g1148 157 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Vra9g1148 157 PRINTS Ethylene responsive element binding protein signature 34 50 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1148 Vra-Chr9 15904448 15904921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1148 6 69 AP2-EREBP Transcription Factor Family AT3G16770 82.812 8.11e-34 117
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra9g1148 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1148 K09286 - vra:106773426 315.849