Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1146 ATGTTTCCATTGAGAAGAGTTATGGCATTCTATATGATGAGTGAGGTATTATCTGTGATTTGTCACGCCATGCCTCCTTCTTCCATCATTCAGGAACGACAGGCTTTGCTCCACAGTGGTTGGTGGAATGATTATCTAAATATCTCAGATCATTGTTATTGGCCGGGTATCTTTTGCAACAAAACTCTAAGAAGTGTTACTGATATTGACAGTGGGTCCATGAAGATTCCTTCGTCAAAAGAATTGCTTTGGATTGAGAAGTTGAACGTCACTGCCTTCCCCAATTTAGTCTATCTGCATCTATCTGGAATGGGTCTTAGAGGAACCATCCCCACAGAAATAGGCTCTCTTAGATACCTTGCCTCTCTTGATTTGTCCAACAATGGTCTCCAAGGTTCAATCCCTCCTACTTTAGGTCGATTGGAGAACTTAGTACGTCTCTACCTTCATTCTAATCAAATAGAAGGTGACATACCTGAGCATTTAGGAAATTTGTCCAAATTAGAAGTTTTGCAACTATCTCATAACAAAATTTCGGGTTTATTACCTCCAAAACTTTTGCAAATGAACAAAATGTCCTCTTTAAATCTCTCGTCAAATCAATTATGTGGTTCAATCCCATTAAAAACCATGAGCTGTCCCTTTGCTACAATAGTTGATTTGAGTCATAACTTGTTTAATGGAAGCATAACCTCTCAAATTGGTTGTGTAAATGACCTTAATCTTAGTCACAATTTTATTGTGGGTGAGATTCCATCTCCTTTTACATGGAGCTCCGAACTTAGACGATTGGATCTGAGTTATAATAATCTTTCAGGTAAAGTACACCGGGAACTTTCTAGTCTATCATACATAAACCTTGCATACAATTCCTTGAACTTCTCACAAGACCTTGACTCAAAATGGAAGGTACCAGACTATTGTTTTTTCAAGGAAGACTCGTTAATTGATGATAACCACATGCAGAATTTCACATATTGCCACTTGATGAACCACACGAATCCTCAAACTAGAAAAAGTAATCCCATGATCTTGTTAATTGTTCTTCCTATAATTTTCTTCAATCTTTTTGTACTCCTTCCATTAATATATTTCTCAAGATGTATTCCTAAGAAAAAATATGGAGGAATATCAACAAAGAATGGAGACTTGTTTTCTATATGCAATTATGATGGTAAAATTGCATTTGAGGATATCATTGAAGCAACTGAAGACTTTGACCTCAAGCATTGTATTGGGACAGGCGGATATGGTAGTGTTTATAGAGCACAATTACCCAGTGGTAACGTTGTAGCATTAAAAAAGCTTCATCGAATGGAATCTCAAAATCCATCTTTCAACAGAAGTTTCCACAATGAGGTGAAAATGTTAACGGGAATTCGTCATAGAAACATTGTAAAGCTTCATGGCTTTTGCCTCCACAATCAATTCATGTTTCTTATCTATCAATACATGGAAAGAGGTAGTTTATTTTATATTTTGAATAATGATATGGAAGTTCATGAGTTGAATTGGAATAAAAGGGTAAATGTCATTAAAGGGTTGGCACAAGCTTTAAGCTACATGCATCATGATTGTACCACACCAATTGTTCATCGAGATGTAACAAGTAGTAATGTTCTATTAAACTCACAATTAGAGGCTTGTCTCTCAGACTTTGGCACAGCTAGACTATTGGATCCTGATTCTTCAAATCAAACCTTGGTAGTTGGCACTTATGGCTACATTGCCCCAGAGCTTGCTTATACGTTGAGTGTGACAGAAAAATGTGATGTTTATAGTTTTGGGATAGTGACTTTGGAGACATTAATGGGAAAACATCCTAGGGAGTTAATCTCAACTTTATCAAACCCAATAACTCAAAATATGTTGGTGAAAGATCTCTTGGATTCACGTCTTCCTCCTCCTCATGAGAAAGATGCTCAAGATGTAAATCTTGTGATAAATGTAGCATTATCATGTTTGTGCTCCAAACCAAACTTGAGGCCATCAATGCAACAAGTGGTTGAGAAACTCTCTAGTTTTAAATTTCCATTAGATTCGCCTTTCCATGAAGTTTTCATCCGTCAAGTGATGAGCCAAGACATATTTCATCTTTCATCCAAGTTTTAA 2112 0.3655 MFPLRRVMAFYMMSEVLSVICHAMPPSSIIQERQALLHSGWWNDYLNISDHCYWPGIFCNKTLRSVTDIDSGSMKIPSSKELLWIEKLNVTAFPNLVYLHLSGMGLRGTIPTEIGSLRYLASLDLSNNGLQGSIPPTLGRLENLVRLYLHSNQIEGDIPEHLGNLSKLEVLQLSHNKISGLLPPKLLQMNKMSSLNLSSNQLCGSIPLKTMSCPFATIVDLSHNLFNGSITSQIGCVNDLNLSHNFIVGEIPSPFTWSSELRRLDLSYNNLSGKVHRELSSLSYINLAYNSLNFSQDLDSKWKVPDYCFFKEDSLIDDNHMQNFTYCHLMNHTNPQTRKSNPMILLIVLPIIFFNLFVLLPLIYFSRCIPKKKYGGISTKNGDLFSICNYDGKIAFEDIIEATEDFDLKHCIGTGGYGSVYRAQLPSGNVVALKKLHRMESQNPSFNRSFHNEVKMLTGIRHRNIVKLHGFCLHNQFMFLIYQYMERGSLFYILNNDMEVHELNWNKRVNVIKGLAQALSYMHHDCTTPIVHRDVTSSNVLLNSQLEACLSDFGTARLLDPDSSNQTLVVGTYGYIAPELAYTLSVTEKCDVYSFGIVTLETLMGKHPRELISTLSNPITQNMLVKDLLDSRLPPPHEKDAQDVNLVINVALSCLCSKPNLRPSMQQVVEKLSSFKFPLDSPFHEVFIRQVMSQDIFHLSSKF* 704
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1146 703 Gene3D Phosphorylase Kinase; domain 1 377 484 - -
Vra9g1146 703 Gene3D Transferase(Phosphotransferase) domain 1 485 680 - -
Vra9g1146 703 PRINTS Leucine-rich repeat signature 120 133 - -
Vra9g1146 703 PRINTS Leucine-rich repeat signature 165 178 - -
Vra9g1146 703 Pfam Protein kinase domain 408 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1146 703 SUPERFAMILY L domain-like 45 293 - -
Vra9g1146 703 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 31 293 - -
Vra9g1146 703 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 238 690 - -
Vra9g1146 703 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 31 293 - -
Vra9g1146 703 PANTHER FLAGELLIN-SENSING-LIKE PROTEIN 238 690 - -
Vra9g1146 703 Pfam Leucine rich repeat 143 202 IPR001611 GO:0005515
Vra9g1146 703 Gene3D Ribonuclease Inhibitor 27 314 IPR032675 -
Vra9g1146 703 ProSitePatterns Protein kinases ATP-binding region signature. 412 434 IPR017441 GO:0005524
Vra9g1146 703 ProSitePatterns Tyrosine protein kinases specific active-site signature. 530 542 IPR008266 GO:0004672|GO:0006468
Vra9g1146 703 SUPERFAMILY Protein kinase-like (PK-like) 393 672 IPR011009 -
Vra9g1146 703 ProSiteProfiles Leucine-rich repeat profile. 167 188 IPR001611 GO:0005515
Vra9g1146 703 ProSiteProfiles Protein kinase domain profile. 406 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1146 Vra-Chr9 15677318 15681640 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1146 92 578 Receptor kinase-like Gene Family AT4G08850 38.370 2.72e-104 339
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Vra9g1146 Pkinase 4.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1146 - - vun:114165531 991.49