Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1142 ATGGCATCTGAGACTCAGAGGGCTCCTATGTTGCCCATCTCCTTTTTTAAAGTTATTCTTAGAACGAATCTTCAAACTGTTAAAATACCAAATATGTTTACAGCCAAATATGGAGATGGTCTGCAAAATCCTTTCTTCATGAACCTTCCAAATCAAACTCAATGGAAAGTGATTTGGGAAAATGAAAGCGGTGAGATTTTGCTGAAAGAGGGGTGGAATGAATTTACGGAACATCATTCCTTGGACCACGGAGATTTTGTTTTCTTTGAATACGTAGGAACAGATCAGATCAATGTAAATATATGTAAACAAAGTGGAGTAGAAATGGACTATCCACACGAAGAAGAGAACCCTGAACAAATAGGAGGTGAGAGGTCTGTTCAAAGAACTTCATCTCTGAAGCAGCCAAATGAAACCAGGGCAAGAGAAGTAGCATGCAATTTCATTTCATGCAATCCCTTTTTCACTGTTGTCATCACACCTTCTCATGTCATGGAATATCGGATGAACGTACCAGATCTAGAAGGCATTATTGAAAAGAAGGAGTACGTGGTGCTGCAGCGTGGGGAAACATCGTGGAGAAAAAGGATGTTATTTAATAATGCTCGTTATAGATTCGGTGCTGGATTAGGATGA 636 0.3947 MASETQRAPMLPISFFKVILRTNLQTVKIPNMFTAKYGDGLQNPFFMNLPNQTQWKVIWENESGEILLKEGWNEFTEHHSLDHGDFVFFEYVGTDQINVNICKQSGVEMDYPHEEENPEQIGGERSVQRTSSLKQPNETRAREVACNFISCNPFFTVVITPSHVMEYRMNVPDLEGIIEKKEYVVLQRGETSWRKRMLFNNARYRFGAGLG* 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1142 211 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 11 123 - -
Vra9g1142 211 SMART B3_2 15 105 IPR003340 GO:0003677
Vra9g1142 211 MobiDBLite consensus disorder prediction 112 138 - -
Vra9g1142 211 SUPERFAMILY DNA-binding pseudobarrel domain 14 105 IPR015300 -
Vra9g1142 211 Gene3D - 11 106 IPR015300 -
Vra9g1142 211 Gene3D - 133 211 IPR015300 -
Vra9g1142 211 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Vra9g1142 211 CDD B3_DNA 14 103 IPR003340 GO:0003677
Vra9g1142 211 MobiDBLite consensus disorder prediction 123 138 - -
Vra9g1142 211 PANTHER B3 DOMAIN-CONTAINING 11 123 - -
Vra9g1142 211 Pfam B3 DNA binding domain 22 104 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1142 Vra-Chr9 15629922 15631027 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1142 4 112 B3 DNA Binding Superfamily AT4G01580 30.357 3.41e-11 58.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra9g1142 B3 3.2e-12 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1142 - - vra:106773422 440.654