Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1123 ATGCAACCAAGAACAAGTAGTGTTGGAGATAGCATTCGGGTAAGTACCTCAACTGTACCTAGTAATTCTTGTGGTGGAACTGAACTAGATGACCTAGACTCATTTCGAGATGTGTACATATGGGGTAAGTTTTTGTCAAATGGGGTTTCAGCTGATGGGATTGGAACTCAAATTCCTTCTCAGATAGATGTGTTGATTCCAAAGCCATTAGAGTCAAATGTTATTCTAGATGTTTGCCATATTGCAACTGGTGCACACCACATTGCTGTAGTAACTAAGCAAGGGAATGTTTTTACATGGGGGAAAGACTCAGGGGGAAGGCTTGGTCATGGAATTGACAAGGATTTTGTCTCCCCACGTGAAGTTAAGTTTCTTGAAGGTACTGAGTTTGACTTTGTTGCATGTGGAGAGTATCACACAGGAGTTATATCTAAATGCTATGAACTTTATACATGGGGTGATGGAGCACATAATGTTGGACTTCTTGGACATGGCTCTGAGGCTAGCCATTGGATGCCAAAAATGGTCAATGGCCCTTTAGAAGGAGTTGAAGTTGTGTGTGTTGCTTGTGGCACATGGCATTCAGCATTGGCAACCTCAGATGGAAAACTTTTTACTTTTGGTGATGGTGCATTTGGTGTCTTGGGCCATGGAGATCAAGAGAGTGTGGTGTATCCAAAAGAAGTGAAACTTTTGAGTGGACTAAAGACTATAAAGGTTGCATGTGGAGTTTGGCACACAGCAGCTATTATGGAGGTTGAATTACAATCTGGTTCAGATGCTTCATCTGGGAAACTTTTCACATGGGGTAATGGAGATAAACATTGTCTGGGTCATGGAAACACAGAAACATACCTTCAACCTACTCGTGTAGCTCCACTTACGGGATATAACTTTCACCAAGTTGCATGTGGGCACACAATGACTGTTGCTTTAACTACTTCTGGTCATGTATTTGCAATGGGAGGAACTGAACATGGCCAATTGGGAAATCCTGTGGCATCTGGAAAAATACCAACTTTAGTCCAAGATAAGTTGCTGGGTGAGATTGTTGAGGAAATATCATGTGGAGCACATCATGTTGTTGCCTTGACAAAGAAAGGTGAACTATATACATGGGGAAAGGGTGCCAATGGAAGATTAGGGCATGGAGATGTTGACGATAGGAAATCTCCTACATTGGTTATAGCCATGAAAGATAGGACTATAGAAAACATCTCATGTGGCTCTAACTTCACATCATGTGTATGCATCCATAAATGGGTCTCTGGAGCTGATCAAACACTTTGCTCTGGTTGTCGACAAGCGTTTGGTTTAACAAGAAAAAGGCACAATTGTCACCACTGTGGTTTGGTATTTTGTCATGCGTGTAGTACTAAAAGAGCATTCAAAGCAGCATTGACTGCAACACCAGAAAAACTTCATCGTGTGTGTGATAATTGTTATGTTAAGCTCAAAGTTTTTGATGAAAATGGTTCTTCCAAGTTAGACAAAAAGCCTACTACCACCACTACCACTACTACTAATAACTTTATAAATGAAAAGGAAAAATCAAACCAAGCAGTAATAAGACCCTCAAGAATTCTCTTGGCTCCTATAACTGAACCTGTGAATTACCTTGAAATAAAGAATAATAACCCTGAAGATAATGGTGATTCTACTTCCTTTGTACGAGCTTCCCTTGTTCCATCTCTTGTACAATTGAAAGATGTTGCATTTCCAACTTCACTTAGTTCTATTCAAACTATTTTAAAGCCTATAATTCCTCTTAGTCCGCCACAAACTCCGCCACAAACTCCACCGCAAACTCCGACACCAAATACCAGTCCGGGGCCCAAATTTACAAACACAGTGAGACAAGGCGCCGCTCGCCCTGCTAGCCCTAGGTTTTATGGAAGTATTAACGAGAGTTTAAGAAGGACAAATGATATGTTGAATCAAGAAGTTGCAAAGTTACAGAAACAGATTCAAAGTTTAAAGGACAAAAGTGACAAGCAAGATATGGAAATCAAAAGGCTTAACAAAAAGGCTACGGAAGCTTCTGCCCTTGCTGCAGTGGAATATTCTAATCACAGAGTAACGAAACAATTTGTTGAATCTACTATATCTCAGATGAAGGAAGTGACTGACAAATTGCCTGGAGAAATTTCAGAAAGTCGGCATTTGAAAGATGTACTTATTCGAGTCAAAGATTTTCTTAAAGAAACTTCAGAATCTGAAACATCTTCATATAAATCAAAATTGGAGTCAACACAACAAAATATACCTAAAGTTAACCATTGTGAAGAAAGAGGAAACTCTATCAAAGAAAATAATGCTGAGGTTGCGGGAGTTGATGAATCTCAGGAACAAGATCATGTCTTCCATGAATGTATTGGTACACAAATGACTTTAGAAAACTCCGAAGATGGTTCAAGATCTTCACGACAAGGAAACCAGGGAGAAGTACAAGTTATTGAAAAATTTGATCATGGAGTTTATGTGATTCTCATGAAACGGCCTGATGGTACCAAAATTTTTAAACGAGTTAAATTCAGTAGACGAAGATTCACTGAAAATCAAGCAGAAAAATGGTGGGACGAAAACAAAAGTGCGATGCAATTGGAAGGATCCCTTATCTTTGCCAGGTTTTCTAAGTGCTCTTTTGGAGTCACACAAATTGAATATCTTGGGCATACCTTATTTGGTTCTAGACTAGTTATGGATGATACCGAACTGGTTGCATTACGTGAGTGGCCCCAGCCTTCCAATTTAAAATACTTAAGAGGTTTCCTAGGCCTTACAGGATATTATAGAAGGTTTGTCAAACACTATACCAGTATTGCTGCATCATTAACAGATTTACTCAAGAAAGATGCTTTTCGTTGGACTGAAAAAGCTACAACAGTTTTTGAAAAATTGAAGTTGGCAATGACTTCTGCTTCTGTCTTGGCTCTTCCCATATTTAAAGACTCCTTTGTGCTGGAAACTGATGCATCTGGAATGGCAGTAGCTGGAGTCCTTAGTCAGAATGCGCACCCAATCGCTTATTTTTCCAAGAAAATGTCCAACAGAATGCAAAAGCAATATGCATATGTCAGAGAACTTTATGCCATTACCGAAGCATTGGCTAAGTTTAGATATTATCTCCTGGGACACCACTTCATTATTAAAGCTGATCAAAAAAGTTTGAAGCAATTATTGGAACAAACTCTCCAAACACCTGTGCAAAACAACAGTGGCAACCAAAATTTTTAA 3237 0.393 MQPRTSSVGDSIRVSTSTVPSNSCGGTELDDLDSFRDVYIWGKFLSNGVSADGIGTQIPSQIDVLIPKPLESNVILDVCHIATGAHHIAVVTKQGNVFTWGKDSGGRLGHGIDKDFVSPREVKFLEGTEFDFVACGEYHTGVISKCYELYTWGDGAHNVGLLGHGSEASHWMPKMVNGPLEGVEVVCVACGTWHSALATSDGKLFTFGDGAFGVLGHGDQESVVYPKEVKLLSGLKTIKVACGVWHTAAIMEVELQSGSDASSGKLFTWGNGDKHCLGHGNTETYLQPTRVAPLTGYNFHQVACGHTMTVALTTSGHVFAMGGTEHGQLGNPVASGKIPTLVQDKLLGEIVEEISCGAHHVVALTKKGELYTWGKGANGRLGHGDVDDRKSPTLVIAMKDRTIENISCGSNFTSCVCIHKWVSGADQTLCSGCRQAFGLTRKRHNCHHCGLVFCHACSTKRAFKAALTATPEKLHRVCDNCYVKLKVFDENGSSKLDKKPTTTTTTTTNNFINEKEKSNQAVIRPSRILLAPITEPVNYLEIKNNNPEDNGDSTSFVRASLVPSLVQLKDVAFPTSLSSIQTILKPIIPLSPPQTPPQTPPQTPTPNTSPGPKFTNTVRQGAARPASPRFYGSINESLRRTNDMLNQEVAKLQKQIQSLKDKSDKQDMEIKRLNKKATEASALAAVEYSNHRVTKQFVESTISQMKEVTDKLPGEISESRHLKDVLIRVKDFLKETSESETSSYKSKLESTQQNIPKVNHCEERGNSIKENNAEVAGVDESQEQDHVFHECIGTQMTLENSEDGSRSSRQGNQGEVQVIEKFDHGVYVILMKRPDGTKIFKRVKFSRRRFTENQAEKWWDENKSAMQLEGSLIFARFSKCSFGVTQIEYLGHTLFGSRLVMDDTELVALREWPQPSNLKYLRGFLGLTGYYRRFVKHYTSIAASLTDLLKKDAFRWTEKATTVFEKLKLAMTSASVLALPIFKDSFVLETDASGMAVAGVLSQNAHPIAYFSKKMSNRMQKQYAYVRELYAITEALAKFRYYLLGHHFIIKADQKSLKQLLEQTLQTPVQNNSGNQNF* 1079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1123 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 264 315 IPR000408 -
Vra9g1123 1078 Pfam RNase H-like domain found in reverse transcriptase 956 1050 IPR041577 -
Vra9g1123 1078 Coils Coil 635 676 - -
Vra9g1123 1078 Pfam FYVE zinc finger 420 485 IPR000306 GO:0046872
Vra9g1123 1078 SUPERFAMILY FYVE/PHD zinc finger 420 489 IPR011011 -
Vra9g1123 1078 SMART fyve_4 416 487 IPR000306 GO:0046872
Vra9g1123 1078 ProSiteProfiles Zinc finger FYVE/FYVE-related type profile. 424 486 IPR017455 -
Vra9g1123 1078 Gene3D - 906 985 IPR043128 -
Vra9g1123 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 316 367 IPR000408 -
Vra9g1123 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 95 146 IPR000408 -
Vra9g1123 1078 PRINTS Chromosome condensation regulator RCC1 signature 97 113 IPR000408 -
Vra9g1123 1078 PRINTS Chromosome condensation regulator RCC1 signature 147 163 IPR000408 -
Vra9g1123 1078 PRINTS Chromosome condensation regulator RCC1 signature 188 204 IPR000408 -
Vra9g1123 1078 PRINTS Chromosome condensation regulator RCC1 signature 204 218 IPR000408 -
Vra9g1123 1078 PRINTS Chromosome condensation regulator RCC1 signature 305 323 IPR000408 -
Vra9g1123 1078 PRINTS Chromosome condensation regulator RCC1 signature 363 384 IPR000408 -
Vra9g1123 1078 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 765 873 - -
Vra9g1123 1078 PANTHER CHROMATIN REGULATOR PHD FAMILY-RELATED 1 762 - -
Vra9g1123 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 81 91 IPR000408 -
Vra9g1123 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 147 201 IPR000408 -
Vra9g1123 1078 MobiDBLite consensus disorder prediction 1 25 - -
Vra9g1123 1078 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 419 496 IPR013083 -
Vra9g1123 1078 SUPERFAMILY DNA/RNA polymerases 874 1065 IPR043502 -
Vra9g1123 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 202 253 IPR000408 -
Vra9g1123 1078 Gene3D - 986 1052 - -
Vra9g1123 1078 MobiDBLite consensus disorder prediction 589 608 - -
Vra9g1123 1078 Gene3D - 10 258 IPR009091 -
Vra9g1123 1078 ProSitePatterns Regulator of chromosome condensation (RCC1) signature 2. 240 250 IPR000408 -
Vra9g1123 1078 CDD FYVE_like_SF 430 482 - -
Vra9g1123 1078 ProSiteProfiles Regulator of chromosome condensation (RCC1) repeat profile. 368 419 IPR000408 -
Vra9g1123 1078 Pfam Transcription factor regulating root and shoot growth via Pin3 817 864 IPR013591 -
Vra9g1123 1078 SUPERFAMILY RCC1/BLIP-II 36 421 IPR009091 -
Vra9g1123 1078 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 765 873 - -
Vra9g1123 1078 PANTHER REGULATOR OF CHROMOSOME CONDENSATION 1 762 - -
Vra9g1123 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 367 415 IPR000408 -
Vra9g1123 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 149 197 IPR000408 -
Vra9g1123 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 315 364 IPR000408 -
Vra9g1123 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 263 312 IPR000408 -
Vra9g1123 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 201 250 IPR000408 -
Vra9g1123 1078 Pfam Regulator of chromosome condensation (RCC1) repeat 95 143 IPR000408 -
Vra9g1123 1078 CDD RNase_HI_RT_Ty3 987 1068 - -
Vra9g1123 1078 MobiDBLite consensus disorder prediction 588 632 - -
Vra9g1123 1078 Gene3D - 259 418 IPR009091 -
Vra9g1123 1078 ProSiteProfiles BRX domain profile. 816 871 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1123 Vra-Chr9 14857033 14875947 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1123 797 869 Major Intrinsic Protein MIP AT1G31880 34.247 2.06e-08 55.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1123 - - vra:106773411 2120.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0676 4 12584052 12590286 Vra9g1123 9 14857033 14875947 PCT