Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1118 ATGGCATCTGAGAATCAGAGGGCTCCTATGTTGCCGATCTCCTTTTTTAAAGTTATTCTTAGAACGAATCTTCAAACCGTTAAAATACCAAATATGTTTACTGCCAAATATGGAGATGGTCTCCAAAATCCTTTCTTCATGAACCTTCCTAATCAAACTCAATGGAAAGTGATTTGGGAAAATGAAAACGGTGAGATTTGGCTGAAAAAGGGGTGGAATGAATTTACGGAACATCATTCCTTGGACCACGGAGATTTAGTTTTCTTTGAATACGTAGGAACAGATCAGATCAATGTAAATACGTATTCTTCACAAAACATGTCGTTGACTGGTTTAGTACGTGAATTGTATTCCAAAGGTGAGAGGTCTGTTCAAAGAACTTCATCTCTGAACCACCCAAATGAAACCAGGGCAAGAGAAGTAGCATGCAATTTCATTTCATGCAATCCCTTTTTCACTGTTGTCGTCACACCTTCTCATGTCATGGAATATAGGATGGTGGGTAAATCTTAA 513 0.3821 MASENQRAPMLPISFFKVILRTNLQTVKIPNMFTAKYGDGLQNPFFMNLPNQTQWKVIWENENGEIWLKKGWNEFTEHHSLDHGDLVFFEYVGTDQINVNTYSSQNMSLTGLVRELYSKGERSVQRTSSLNHPNETRAREVACNFISCNPFFTVVVTPSHVMEYRMVGKS* 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1118 170 Gene3D - 11 106 IPR015300 -
Vra9g1118 170 CDD B3_DNA 14 95 IPR003340 GO:0003677
Vra9g1118 170 ProSiteProfiles B3 DNA-binding domain profile. 12 105 IPR003340 GO:0003677
Vra9g1118 170 PANTHER TRANSCRIPTION FACTOR B3-DOMAIN FAMILY-RELATED 12 102 - -
Vra9g1118 170 Pfam B3 DNA binding domain 22 97 IPR003340 GO:0003677
Vra9g1118 170 PANTHER B3 DOMAIN-CONTAINING 12 102 - -
Vra9g1118 170 SMART B3_2 15 105 IPR003340 GO:0003677
Vra9g1118 170 SUPERFAMILY DNA-binding pseudobarrel domain 14 102 IPR015300 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1118 Vra-Chr9 14708572 14709270 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1118 11 123 B3 DNA Binding Superfamily AT3G18990 27.500 2.92e-11 58.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Vra9g1118 B3 1.3e-10 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1118 - - vra:106773407 355.91