Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1110 ATGGATAACGCCTTCTCATCCTACAAACTCCCACGGAAGTATGATGTGCTCATCAACTTCACTGGAGAAGACATCAACAGAAAATTTGTTTCTCATCTCAATTATGCCTTCTCTACTGTTGGTCTCACCACTTTCCTTCATCACCCCAATGCAGTGAAGTCAACTCACATTCAAGAACCTGTTCTCAGCCACTGTCGTGTAGTAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTGATCAGCTTCAACAAATCATCAAATGGCACGAAACTTATTGCCGACATGTTCTGCCCGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGTAACTTTGGAAAAGCCTTGAAGGCAACTGCACAACAAACATTTTCAGGTCAAGAACTGAAGCATGGCATGTCTAGGTGGAGCCAAGCAATCACCAAAGCTGCAAATCTCTTCGGATGGGATGAAAGCAATCACAGGAGTGATGCTGAATTAGTGGAGAAAATTGTTAAGAGCGTTGTTAATTTGCCAGCCTTGTCTGTTACTAAATTTCCAGTTGGATTACAATCCCACTTGGAAGATCTGTTTCGAACTATCAAAAATAAATCCACGGAATTTTGTATGATCGAGATATGTGGAGAGGAAGGATCTGGTAAAACAACTCTTGCCAAAGCGATCTACAATCAAATTCATTGGACGTTCAAGGAGAAAAGTTTCATTGAAAATATTTCACAAGTTACCGGAACAAGAGGGTATATTCGTTTACTAGAACAACTTCTTTTAGATGTCCTAAAACAAAAGGTGGAGATTCCTAGCGTTGATGTGGGAAATAAAATGATTCGGGAACGACTTTATGGAAAAAGGCTACTCATTGTACTTGATAATGTGCTTCACAGCTATGAACTTTTAGAAGTATGGACATATAATCATTATAGGTTCAGCAAAGGAACTGTAATAATAATTACAACAAGCGATGAAAACCTACTGATGGGCCAGCCGACATATTCTATGTTTCGGATAGAGCGAATGAACGCAGAGGAGTCCCTTGAGCTTTTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAGGAAGAATACGAAGACCTTGCAAGAAGAGTAGTTAGTTATTGTGGAGGACTACCACTAGTTCTTGAAATCATTGGAAGTAGTTTATTTGAAAGGACGGAAGAAGAATGGCATCGTGTACTGTTTGCGATAGATGGCAGGCATCGTGTTTCAGAGATAATAAAAGTAAGCATCGAAGGTTCACTCAATGAAATGGAAAAATATATATTCGTTGATGTATGTTGTTTGTTTGTCGGTAAGAGCAGAGCCTATGTTAGGAAGATCCTAAAGGGCTGTGGAGTAGATGCTGATATTGCAATAAGAGTTCTCATCCAGCGTAACCTCATCAAAATTGACAACAACAAAAAATTTCGAGTGCATCCTTTGCTACAAAATATCGGAGGACAAATTATTCATGAAAAAGTAGTAGGAGATTTTGAGAAGAACAGGCCACCGTCAAAATATGAGACAGAAGCCCTGCAGTGGTTGCCTGCGAAACTGCTCGCTGCCATCGAAAGTGTGCAGCCGACTTTAAATTCTCAGTACCTTTTTAAGAAACTAAGATGGATCAGTTCGTATGGGCTTTCTTCAGAATGTCTGCCTAACAACTTCTATTGGGATGATGCAACAGTGATTGATTTGAAACGAAGTCTTCTTCAATTTCTCTGGAAAACACCCCAGGTTTTGAGATCGCTAAAAGTCCTTAACCTCAGTCACTCCACGGATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAACACCTCATTTTGAAATATTGTTCTAGATTGCGCAAACTACACCAATCTATTGGATCACTCAACAGTCTTATCCTACTAAATTTGAAATTCTGTACAAGTCTAAACAATCTTCCAACAGAGATATATGAGTTGAAATCTTTAAGAACCTTCATTCTCTCTGGTTGTTCCAAGATTCACATAATGGATAAAGATATAGCAAAGTTGGAATCCTTGATAACTCTAATTGCTGATACACCTGTCAAACATGTGCCTTTTTCAATTATGACAGGATCTTACACACAAATCATTTGGCCTATCCGGAAGTTTACCGTTCGGACCATCCACAACCTTGCGGGAAGGTCACTCCCGTCATCTAGAGCAACCTTGCGGGAAGGTCACTCCCGTCGTCCAGCGATCCTGGACGTTAAACACCTTGCGGGATGGTCACTCCCGTCGTCCAGCGATCCTGGACGTTAA 2295 0.4039 MDNAFSSYKLPRKYDVLINFTGEDINRKFVSHLNYAFSTVGLTTFLHHPNAVKSTHIQEPVLSHCRVVIVVFTQTYSQSAWCLDQLQQIIKWHETYCRHVLPVYYEIQPSDVRLQKGNFGKALKATAQQTFSGQELKHGMSRWSQAITKAANLFGWDESNHRSDAELVEKIVKSVVNLPALSVTKFPVGLQSHLEDLFRTIKNKSTEFCMIEICGEEGSGKTTLAKAIYNQIHWTFKEKSFIENISQVTGTRGYIRLLEQLLLDVLKQKVEIPSVDVGNKMIRERLYGKRLLIVLDNVLHSYELLEVWTYNHYRFSKGTVIIITTSDENLLMGQPTYSMFRIERMNAEESLELFSWHAFREPKPKEEYEDLARRVVSYCGGLPLVLEIIGSSLFERTEEEWHRVLFAIDGRHRVSEIIKVSIEGSLNEMEKYIFVDVCCLFVGKSRAYVRKILKGCGVDADIAIRVLIQRNLIKIDNNKKFRVHPLLQNIGGQIIHEKVVGDFEKNRPPSKYETEALQWLPAKLLAAIESVQPTLNSQYLFKKLRWISSYGLSSECLPNNFYWDDATVIDLKRSLLQFLWKTPQVLRSLKVLNLSHSTDLTTTPDFTGLPSLEHLILKYCSRLRKLHQSIGSLNSLILLNLKFCTSLNNLPTEIYELKSLRTFILSGCSKIHIMDKDIAKLESLITLIADTPVKHVPFSIMTGSYTQIIWPIRKFTVRTIHNLAGRSLPSSRATLREGHSRRPAILDVKHLAGWSLPSSSDPGR* 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1110 764 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 501 IPR044974 GO:0006952
Vra9g1110 764 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 510 709 IPR044974 GO:0006952
Vra9g1110 764 PRINTS Disease resistance protein signature 210 225 - -
Vra9g1110 764 PRINTS Disease resistance protein signature 285 299 - -
Vra9g1110 764 PRINTS Disease resistance protein signature 379 393 - -
Vra9g1110 764 PRINTS Disease resistance protein signature 584 600 - -
Vra9g1110 764 SUPERFAMILY "Winged helix" DNA-binding domain 413 498 IPR036390 -
Vra9g1110 764 Gene3D - 9 175 IPR035897 -
Vra9g1110 764 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vra9g1110 764 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 174 406 IPR027417 -
Vra9g1110 764 Pfam TIR domain 13 179 IPR000157 GO:0007165
Vra9g1110 764 SMART till_3 13 153 IPR000157 GO:0007165
Vra9g1110 764 SUPERFAMILY L domain-like 531 687 - -
Vra9g1110 764 SUPERFAMILY Toll/Interleukin receptor TIR domain 9 156 IPR035897 -
Vra9g1110 764 Gene3D - 176 337 IPR027417 -
Vra9g1110 764 Pfam NB-ARC domain 193 414 IPR002182 GO:0043531
Vra9g1110 764 CDD AAA 213 343 - -
Vra9g1110 764 Gene3D - 344 424 IPR042197 -
Vra9g1110 764 Gene3D Ribonuclease Inhibitor 525 694 IPR032675 -
Vra9g1110 764 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 501 - -
Vra9g1110 764 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 510 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1110 Vra-Chr9 14280436 14284903 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1110 3 700 WRKY Transcription Factor Family AT4G12020 24.933 2.14e-49 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1110 - - var:108346736 971.844