Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1073 ATGGAAGGTCGCCGGAGGATAACGCTTTACGAACAAATGACAGCTAGCAACGGCAATACCAACAGCGGCAGCAGCAGCCGAGACTCACTAGCGAGCCTCATGCTCGAAGATGTTGTATTTAAGAAGGCCGAAGCCGACGCCGAAGCGAGCCGTGACCTCAGCCGAAGCCGGACTCTCCAAGACATCATTCGCGAAGAGAAGCCTAACGGAGACGCGAAGGATCGCAACTCCTGGAAAGCCTTCAAGGAGAAGCTTCGGCTCAAGCGCGCTATCGGCTTGGCTTGGTCCTCCGCCACTACTCACAGTAATAACAGCAATAATAACGACAATGAAGACGGAAGTTTACCTCAAACTCGCCTCCTCTCGGACGACGCGGCGACTCAGCAGAACGACGTCATTGTGGAGGACGCAAACGATTCAGATCCGATCGCGCGGTTCGGATCTCCGACGGCCAACACGGCGGCCGGCGGCGATTCCTCCGACGGGGAGAACAACCAGGAGGCGGCGGTTGGCGTGTCGCTGATGGATTTGTTGGAGGAAGCGGAGCAGGAAATGGATTTGTACAGAGTGAGCGATGATGATGTGGTGGCGGATTTTGAGAAGAGGGATGAAGATGAAGCGGAAGACGAAGAAAAAGAAGGTTTGGTGGAGTATAACTGCTGCGTCTGCATGGTGCGCCATAAAGGCGCGGCGTTTATCCCGTGCGGACACACCTTCTGCAGAATGTGTTGCAGAGAGATTTGGGCCAGCAGAGGGAATTGCCCTCTCTGCAATAATTTAATTTTAGAAATTCTTGATATTTTCTAA 807 0.5341 MEGRRRITLYEQMTASNGNTNSGSSSRDSLASLMLEDVVFKKAEADAEASRDLSRSRTLQDIIREEKPNGDAKDRNSWKAFKEKLRLKRAIGLAWSSATTHSNNSNNNDNEDGSLPQTRLLSDDAATQQNDVIVEDANDSDPIARFGSPTANTAAGGDSSDGENNQEAAVGVSLMDLLEEAEQEMDLYRVSDDDVVADFEKRDEDEAEDEEKEGLVEYNCCVCMVRHKGAAFIPCGHTFCRMCCREIWASRGNCPLCNNLILEILDIF* 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1073 268 SUPERFAMILY RING/U-box 219 264 - -
Vra9g1073 268 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 174 265 IPR013083 -
Vra9g1073 268 SMART ring_2 220 257 IPR001841 -
Vra9g1073 268 CDD RING-HC 220 257 - -
Vra9g1073 268 ProSiteProfiles Zinc finger RING-type profile. 220 258 IPR001841 -
Vra9g1073 268 MobiDBLite consensus disorder prediction 98 117 - -
Vra9g1073 268 PANTHER OS01G0917900 PROTEIN 21 129 - -
Vra9g1073 268 PANTHER OS01G0917900 PROTEIN 142 268 - -
Vra9g1073 268 Pfam Zinc finger, C3HC4 type (RING finger) 218 261 - -
Vra9g1073 268 PANTHER OS01G0917900 PROTEIN 142 268 - -
Vra9g1073 268 PANTHER OS01G0917900 PROTEIN 21 129 - -
Vra9g1073 268 MobiDBLite consensus disorder prediction 136 165 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1073 Vra-Chr9 13661487 13663251 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1073 4 268 C3H Transcription Factor Family AT3G25030 35.424 5.31e-41 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1073 - - gmx:100819018 350.132