Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1070 ATGGGTTTTCCAACTAGCATCAATCACTTTTTTCTGCTCATACTTTCCAGCTTCTGTTTAGGTGTAAGCTCTGTGAATGATACCATCACATCAACCAGCTTCATCAGGGACTCTGACTCTCAGACTATAAGCTCAAGCAACGGTGACTTCAAGCTTGGATTTTTCAGCCCTGGAAACTCCACACATCGCTATGTTGCAATCTGGTATCTCTCTCAAACCTACATCATATGGGTAGGAAATAGAGATCAACCACTGAATGATTCATCTGGGGTGTTCAAAATTCACAAGGATGGGAATCTTGTGGTACTGAATGGACAAAATAGTGTGATATGGTCAACAAATATATCAGTTAATGCTACCAACACTACTGCTCAACTTGACAATTCAGGAAATCTGATCCTGCGTGGTGACTCAAGTTTAACACCATTGTGGGACAGTTTCACACACCCTGCTGATATTGCTGTGCCAAATATGAAAATTGCGACCAATAGGATCACTGGTGAGAAAATTCAGTATGTGTCATGGAAAAGCAGTTCTGATCCTTCATCTGGGTACTTCACTGGGAGCCTTGATAGGTTGGATACACCAGAAGTGTTTTTCTGGTACAACAAAACAAAGCCATATTGGAGAACTGGTCCATGGAATGGAAGAGTTTTCCTTGGTTCACCAAGAATGTTAACTGAGTACTTATATGGATGGCGTTTTGAGCCTAATGATAATGGAACTGCATATCTAACCTACAACTTTGAAAAACCTGCAATGTTTGGAATCCTTACCATAACCCCACATGGCACACTGAAATTGGTAGAGTTTTTGAACAGAACCAAGTTTCTGGAACTTGAGGTGGATCAAAATGAATGTGACTTTTATGGGAAGTGTGGACCCTTTGGAAGCTGTGATAACTCCACATCACCAATTTGCAGCTGTTTAGAGGGGTTTGAGCCAAGCAAGCCAGAGGAATGGAACAGCAGAAATTGGACAAGTGGGTGTGTGAGGACTGTGCCACTGAATTGTACCCAGTTGAGAAATGAGAGTGAAGTTCAAGGAGATGATGGTTTTTTGCAGAAGAATAATATGAAAGTGCCTGACTTTGCGGAAAGATCAGATGGAAACCAAGACAAATGTGGTGCAGATTGCTTGGCAAATTGCTCTTGCTTGGCTTATGCATATGATTCTTCTATTGGTTGTATGTATTGGAGCAGAGAATTGATTGATCTGCAGAAATTTCCTTATGGAGGGGTTGATCTCTTCATTCGTGTGCCATCACAACTTCTACGAAGTGTCCCTCAAGATGTGATTACCGGAAATAAAAAGGAAATTACTAAATTGGAAGAGTTGCCCCTGTTTAAGTTTGAAAAGCTTTCAAATGCTACAAACAATTTTCACTTCGGTAATATGCTTGGAAAGGGAGGTTTTGGTCCTGTATACAAGGGACAATTGGAAAACGGACAAGAAATTGCTGTAAAAAGACTTTCAAAAACATCTGGACAAGGATTGGAAGAATTCATGAATGAAGTGGTAGTGATTTCTAAACTTCAACATCGAAATCTAGTAAGACTTCTTGGATGTTGCATAGAAGGAGACGAACCAATGTTGGTCTATGAGTTTATGCCAAATAAAAGTTTGGATTCATTTCTCTTTGATCCACTCCAAAGGAAGTGTTTAGATTGGAAAAAGCGCTTCAACATAATTGAAGGAATTGCACGAGGAATACTTTATCTTCATAGAGATTCAAGATTAAGAATTATACACAGAGATCTTAAAGCAAGCAACATTTTACTGGACAATGATATGAATCCAAAAATATCAGACTTTGGTTTAGCAAGAATTGTTAGAGGAGGAGATGACGACGAAGCTAACACAAAACGAGTTGTTGGAACTTATGGCTATATGCCACCTGAATATGCAATGGAGGGACTTTTCTCCGAAAAATCAGATGTGTATAGCTTTGGAGTATTATTACTAGAGATTGTAAGTGGACGAAGAAATACTAGTTTTCATAATGATGAACAATCACTCAGTCTTGTTGGATTTGCATGGAGACTATGGAACGAAGGAAACATTATCACTATAATAGATCCAGAAATATGGGATCCAATGTTTGAAAAAAGTATGTTGAAGTGCATACACATAGGACTTTTATGTGTGCAAGAACTTACAAAAGAAAGACCATCTATATCAACTGTGGTTTTAATGCTTATAAGTGAAATTACACATCTTCCTCCTCCAAGACAAGTTGCTTTTGTTCAAAAACAAAATTGTCAGAGTTCAGAGTCTTCTCAGAAAAGTCAATTTAACTCAAACAACAATGTAACTCTTAGTGAAATTCAAGGTAGATAA 2340 0.3842 MGFPTSINHFFLLILSSFCLGVSSVNDTITSTSFIRDSDSQTISSSNGDFKLGFFSPGNSTHRYVAIWYLSQTYIIWVGNRDQPLNDSSGVFKIHKDGNLVVLNGQNSVIWSTNISVNATNTTAQLDNSGNLILRGDSSLTPLWDSFTHPADIAVPNMKIATNRITGEKIQYVSWKSSSDPSSGYFTGSLDRLDTPEVFFWYNKTKPYWRTGPWNGRVFLGSPRMLTEYLYGWRFEPNDNGTAYLTYNFEKPAMFGILTITPHGTLKLVEFLNRTKFLELEVDQNECDFYGKCGPFGSCDNSTSPICSCLEGFEPSKPEEWNSRNWTSGCVRTVPLNCTQLRNESEVQGDDGFLQKNNMKVPDFAERSDGNQDKCGADCLANCSCLAYAYDSSIGCMYWSRELIDLQKFPYGGVDLFIRVPSQLLRSVPQDVITGNKKEITKLEELPLFKFEKLSNATNNFHFGNMLGKGGFGPVYKGQLENGQEIAVKRLSKTSGQGLEEFMNEVVVISKLQHRNLVRLLGCCIEGDEPMLVYEFMPNKSLDSFLFDPLQRKCLDWKKRFNIIEGIARGILYLHRDSRLRIIHRDLKASNILLDNDMNPKISDFGLARIVRGGDDDEANTKRVVGTYGYMPPEYAMEGLFSEKSDVYSFGVLLLEIVSGRRNTSFHNDEQSLSLVGFAWRLWNEGNIITIIDPEIWDPMFEKSMLKCIHIGLLCVQELTKERPSISTVVLMLISEITHLPPPRQVAFVQKQNCQSSESSQKSQFNSNNNVTLSEIQGR* 780
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1070 779 SMART blect_4 34 150 IPR001480 -
Vra9g1070 779 CDD STKc_IRAK 467 733 - -
Vra9g1070 779 Gene3D Transferase(Phosphotransferase) domain 1 537 741 - -
Vra9g1070 779 SUPERFAMILY alpha-D-mannose-specific plant lectins 67 181 IPR036426 -
Vra9g1070 779 Gene3D Phosphorylase Kinase; domain 1 435 536 - -
Vra9g1070 779 SMART serkin_6 461 735 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1070 779 MobiDBLite consensus disorder prediction 757 779 - -
Vra9g1070 779 SUPERFAMILY Protein kinase-like (PK-like) 446 753 IPR011009 -
Vra9g1070 779 CDD B_lectin 38 150 IPR001480 -
Vra9g1070 779 ProSitePatterns Serine/Threonine protein kinases active-site signature. 582 594 IPR008271 GO:0004672|GO:0006468
Vra9g1070 779 Pfam D-mannose binding lectin 75 176 IPR001480 -
Vra9g1070 779 ProSiteProfiles Bulb-type lectin domain profile. 26 147 IPR001480 -
Vra9g1070 779 PIRSF SRK 3 442 IPR024171 GO:0004674
Vra9g1070 779 PIRSF SRK 427 779 IPR024171 GO:0004674
Vra9g1070 779 ProSiteProfiles PAN/Apple domain profile. 338 421 IPR003609 -
Vra9g1070 779 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 434 778 - -
Vra9g1070 779 PANTHER G-TYPE LECTIN S-RECEPTOR-LIKE SERINE/THREONINE-KINASE 16 425 - -
Vra9g1070 779 Pfam PAN-like domain 348 406 IPR003609 -
Vra9g1070 779 Pfam Protein tyrosine and serine/threonine kinase 462 679 IPR001245 GO:0004672|GO:0006468
Vra9g1070 779 Gene3D - 21 149 IPR036426 -
Vra9g1070 779 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 434 778 - -
Vra9g1070 779 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 16 425 - -
Vra9g1070 779 ProSiteProfiles EGF-like domain profile. 283 319 IPR000742 -
Vra9g1070 779 SMART ntp_6 348 420 IPR003609 -
Vra9g1070 779 ProSiteProfiles Protein kinase domain profile. 461 738 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1070 779 CDD PAN_AP_plant 334 421 - -
Vra9g1070 779 Pfam S-locus glycoprotein domain 209 316 IPR000858 GO:0048544
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1070 Vra-Chr9 13592045 13598777 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1070 439 779 Receptor kinase-like Gene Family AT4G11530 56.322 5.93e-128 395
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra9g1070 PK_Tyr_Ser-Thr 6.5e-50 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1070 - - gmx:100786846 1291.95