LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g1062	ATGGACTTGAGGGACGCAAAAGTTGGCTTCTTTCTGTTTTGTAGTTTCTGTCTTGTCACTTTCTCTGAACAAGATGGTTTCTTTAGTCTTTCTTGTGGTGGAAGAACCAGTTTCAGGGATTCATCTAACATTTCGTGGGTACCAGACACCACCTACGTAACCACAGGAAAGACTACTACCATAACATACAGTGATGGTTCGAACTCACTGAACATCTCAGCTCGGTTCTTCCCAAATTCTAGAAGGCGAAAATGTTACAGAATACCAGCGAACAATTCAACCACTTTGGTTCTTGTTAGAGCAAAATTTGTGTACAAGAACTATGATGGACTTGGGAAACCCCCTAAGTTCTATGTTTCAATTGGGACATCTATTGCAGCCACCATAAATCTTGCTGAAGATGATCCATGGAGTGAAGAGTTTTTATGGACTGTCAACATGGATACACTGTCATTCTGCTTAATTGCAATGCCTGAAGGGGGTTCGCCTGTAATTTCTTCTCTTGAAATCAGACCACTTCCTCAGGGAGCCTACACAAATGGCATGACAGATTTTCCTAACAAGTTGCTTAAGAAGAGTTATAGAATTGATTGTGGTCACTCAAATGATTCCATAAGGTATCCCTTGGATCCATTCGATAGAATATGGGATGCTGATAGAAGTTTCACACCCTTTCATGTTGCCATTGGGTTTAAGATTCAACTTAGCTTCAGACAGTCTAGTCTTGTAGAAGAACCACCAGTTGTTGTTCTTCAAACTGGGAGAGTTTTGGCAAGAAGTAATACTCTGACATACAACCTCCCTCTCGATGCATTAGGGGACTACTACATCATCCTCTACTTTGCAGGGATTCTTCCTGTCTTCCCCTCATTTGATGTTCTTATAAATGGAGAACTGGTAAAATCAAACTACAAAATAAATGGATCTGAAACCAGTGCTTTATACATAACGCAAAAAGGAATTGGGAGCTTGAATATAACATTAAAGAGTATCAGCTTTTATCCTCAGATCAATGCATTTGAGGTTTATAAGATGGTTGATATTCCAACTGATGCCTCATCAACCACAGTTTCAGCACTGCAGGTTATTCAGCAGTCCACTGGATTGGATCTTGGATGGCAGGATGATCCATGTCTGCCTTCCCCATGGGAGAAAATTCACTGTGAAGGAAACCTTGTTATATCATTGGATCTTTCAGACATAAATTTGAGATCCATTAGTCCTACATTCGGTGACTTGTTAGACCTCAAAATATTGGATTTGCACAACACATCGCTTACTGGTGAAATACAGAACTTGGATGGCTTGCAGCATCTTGAGAAACTGAACTTAAGTTTCAATCAGTTAACATCTATTGGTGCAGACCTCCAGAACTTGATTAACCTTCAAATATTAGACTTGCAGAACAATAGTTTAATGGGAACAGTACCTGATAGCTTGGGAGAGTTAGAGGACCTCCACTTACTGAACCTGGAAAACAACAAACTACAAGGTCCCCTGCCACAGTCTTTGAACAAAGAAACATTGGAGATCAGGACATCTGGTAATTTGTGTCTTACCTTTTCCACAACATCATGTGATGATGATGCATCATCATCCAATCCCCCAATTGAAGCACCACAAGTTACTGTAGTTCCTCAGAAGAAGCACAATGTACATAACAATCTAGCAATCATACTAGCCACGGTTGGAGGAGCCATAATAGCCTTTCTCTTAATGTGTATTTCAGTATTGATATACAAGACCAAACAACACTATGAAGCCTCCCACACATCAAGAGGAGAAATGGATACGAGGAACTGGGGTGCTGCAAAAGTATTTTCCTACAAAGAAATCAAAGTAGCTACAAGAAACTTCAAGGAAATCATAGGAAAGGGTAGTTTTGGATCTGTTTATCTTGGTAAACTTCCAGAAGGAAAATCTGTAGCTGTCAAAGTTCGCTTTGACAAATCTCAACTGGGTGCTGATTCATTCATCAATGAGGTTAATCTTTTATCAAAAATCCGGCATCAAAATCTTGTGTCTTTGGAAGGCTTTTGTCATGAAAGAAAGCATCAGATATTGGTTTATGAGTACTTGCCTGGGGGATCCCTGGCTGATCATCTCTATGGTTGTCAAAAGATATCCTTAAGCTGGGTGAGAAGGCTGAAAATTGCTGTTGATGCAGCAAAAGGTTTGGACTATTTGCACAATGGAAGTGAACCAAGAATCATACATCGTGATGTGAAGTGCAGTAACATCCTCTTGGACATGGAAATGAATGGCAAGGTCTGTGACTTAGGTCTCTCAAAGCAAGTAACTCAAGCAGATGCAACTCATGTCACCACTGTTGTTAAGGGCACTGCTGGTTACCTTGATCCAGAGTATTATTCCACTCAACAGTTGACAGAGAAAAGTGATGTATATAGCTTTGGAGTTGTTCTTTTGGAACTCATTTGTGGAAGAGAGCCATTGACTCACTCTGGAAACCCTGATTCATTCAACTTGGTGTTATGGGCCAAACCATACTTGCAGGCTGGCGCATTTGAGATAGTGGATGAAGACATAAGAGGAAGTTTTGATCCCTTGAGTATGAAGAAAGCAGCTTTCATTGCTATAAAGTCAGTGGAGAGGGATGCATCACAGAGGCCATCTATTGCAGAGGTATTGACAGAGCTAAAGGAAGCCTACAATATTCAGCTCAGATTCCTTGAATCATGTGAAAATGAGAATTGA	2715	0.4041	MDLRDAKVGFFLFCSFCLVTFSEQDGFFSLSCGGRTSFRDSSNISWVPDTTYVTTGKTTTITYSDGSNSLNISARFFPNSRRRKCYRIPANNSTTLVLVRAKFVYKNYDGLGKPPKFYVSIGTSIAATINLAEDDPWSEEFLWTVNMDTLSFCLIAMPEGGSPVISSLEIRPLPQGAYTNGMTDFPNKLLKKSYRIDCGHSNDSIRYPLDPFDRIWDADRSFTPFHVAIGFKIQLSFRQSSLVEEPPVVVLQTGRVLARSNTLTYNLPLDALGDYYIILYFAGILPVFPSFDVLINGELVKSNYKINGSETSALYITQKGIGSLNITLKSISFYPQINAFEVYKMVDIPTDASSTTVSALQVIQQSTGLDLGWQDDPCLPSPWEKIHCEGNLVISLDLSDINLRSISPTFGDLLDLKILDLHNTSLTGEIQNLDGLQHLEKLNLSFNQLTSIGADLQNLINLQILDLQNNSLMGTVPDSLGELEDLHLLNLENNKLQGPLPQSLNKETLEIRTSGNLCLTFSTTSCDDDASSSNPPIEAPQVTVVPQKKHNVHNNLAIILATVGGAIIAFLLMCISVLIYKTKQHYEASHTSRGEMDTRNWGAAKVFSYKEIKVATRNFKEIIGKGSFGSVYLGKLPEGKSVAVKVRFDKSQLGADSFINEVNLLSKIRHQNLVSLEGFCHERKHQILVYEYLPGGSLADHLYGCQKISLSWVRRLKIAVDAAKGLDYLHNGSEPRIIHRDVKCSNILLDMEMNGKVCDLGLSKQVTQADATHVTTVVKGTAGYLDPEYYSTQQLTEKSDVYSFGVVLLELICGREPLTHSGNPDSFNLVLWAKPYLQAGAFEIVDEDIRGSFDPLSMKKAAFIAIKSVERDASQRPSIAEVLTELKEAYNIQLRFLESCENEN*	905

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g1062	904	ProSitePatterns	Protein kinases ATP-binding region signature.	623	645	IPR017441	GO:0005524
	Vra9g1062	904	SUPERFAMILY	Protein kinase-like (PK-like)	598	886	IPR011009	-
	Vra9g1062	904	ProSiteProfiles	Protein kinase domain profile.	617	897	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra9g1062	904	CDD	STKc_IRAK	623	888	-	-
	Vra9g1062	904	SUPERFAMILY	L domain-like	358	506	-	-
	Vra9g1062	904	Pfam	Malectin-like domain	30	345	IPR024788	-
	Vra9g1062	904	Gene3D	Ribonuclease Inhibitor	356	528	IPR032675	-
	Vra9g1062	904	Pfam	Leucine rich repeat	438	496	IPR001611	GO:0005515
	Vra9g1062	904	PANTHER	LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED	10	899	-	-
	Vra9g1062	904	ProSiteProfiles	Leucine-rich repeat profile.	438	460	IPR001611	GO:0005515
	Vra9g1062	904	SMART	LRR_typ_2	436	458	IPR003591	-
	Vra9g1062	904	SMART	LRR_typ_2	459	483	IPR003591	-
	Vra9g1062	904	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	737	749	IPR008271	GO:0004672\|GO:0006468
	Vra9g1062	904	Gene3D	Phosphorylase Kinase; domain 1	590	692	-	-
	Vra9g1062	904	SMART	serkin_6	617	890	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra9g1062	904	Gene3D	Transferase(Phosphotransferase) domain 1	693	899	-	-
	Vra9g1062	904	Gene3D	-	191	347	-	-
	Vra9g1062	904	Pfam	Protein kinase domain	619	884	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra9g1062	904	PANTHER	OS07G0107800 PROTEIN-RELATED	10	899	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g1062	Vra-Chr9	13484479	13492117	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g1062	10	899	Receptor kinase-like Gene Family	AT5G48740	61.996	0.0	1100

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	RLK-Pelle_LRR-I-1	Vra9g1062		Malectin_like	2.3e-53	CL0202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g1062	-		-	gmx:100812804	1600.1