Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1048 ATGGCACAGGCAGTGGGCCGGAGCAGGTTGGTCGGAGAGTACGTGGTGGGGAGGCAAATCGGCGCAGGGTCGTTCTCGGTGGTGTGGCACGGAAGGCATAAGGTGCACGGAACCGAGGTGGCAATAAAGGAGATCGCCACGCTTCGCCTCAATAAGAAGTTGCAGGAGAGCCTCATGTCCGAGATTTTCATCTTGAAGCGGATTAACCACCCTAACATAATCTGTTTGCACGATATCATTCAGGTTCCTGGGAAGATACATCTTGTGTTAGAATACTGTAAAGGGGGAGATCTGTCCTTGTACATTCAACGCCATGGAAGGGTACCAGAGGCAACTGCAAAGCATTTCATGCAGCAGCTGGCTGCTGGTCTACTAGTTCTTCGAGATAATAACCTTATTCATCGAGACCTGAAACCACAGAACCTTCTTCTCTCCCAGAATGATGAGAAGGCAGTGCTGAAGATTGCTGACTTTGGATTTGCAAGGTCTCTGCAACCTAGGGGCCTTGCTGAAACCTTGTGTGGTTCACCACTCTATATGGCTCCAGAAATCATGCAACTACAGAAGTATGACGCTAAGGCAGATCTCTGGAGTGTTGGTGCAATCTTATTTCAGCTGGTTACAGGAAGAACACCTTTTACTGGAAACAATCAAATACAGTTACTACAGAATATATTGAAATCGACAGAATTGCAGTTTCCATCTGATTGCCCAAATCTGAGTTTTGAATGCAAAGATTTGTGTCAGAAATTGTTACGTCGGAATCCAGTGGAACGTCTAACTTTCGAAGAATTTTTTAACCACCCATTTCTTTCTCAGAAGCAAAGAGAACAGGATGTTGAGCCATTGAGGAGTAGAAGTTCTTCAAGGCTGGTTGGTGGGTTTTTTTCTACAGTGTCTGACCCTTTGAGAAGAACTGAGGAAAATTATCAAGAAGATTGTTTGCCTTTCATCCTAGATGACGACTCTGGTGGCCCCGAGGGGAGTCCATCCTTTTCAAAAAAAAAGTCCTCAATAAAGTCCACATATGGATTTGATCTAAATTCTAAATTAGATAAAGCAGAATCAACATCTCCTATCTCTAATAACATAAATTCTAATTCTGGATTTCGTACTATGACACAAAGATCTCAAAACACTAATAGGAGATTGGACAACCGTAACATTTCAAGAAATCTCACTGATCCTCTAGAATCTCCAGAACAGATGTTCGCAAATCCTTATCCAAAAGTTACGGATTCCCTGGAGAATATTGATCAAGAATATGTTCTGGTGCCAGGGCCCCCTATAGATGTTTCATCTTCTTCTGTGGGTGCTTCCAGGCCCAGCCATACCCCATATAGGTCTGGTAGTTTACCTCAAGAGTCTTCTAGTACAATCACCAGACCCAGTGCTCCAATGCCAATAGTTGGTGCACATACAAATAGCATGTACCAAGTTGGAAGTTCAGGAAGTCAGGACTCTGCCCCTGGGACTTCGCTTGGATCGATGGATATAGGTGATGAACAGCCATCAGCTCACTGCATGACCCGGGTAAAATCATTGCAACAGTGTGCATCTGCCATCACCGAGTTAGTTAATGAAAAGATGGAGGCAGGAAAGCATCTGGAAGCGTTTTCTATTCAGCTTGTAATTCTTGCAATCTGGAAGCAAGCACTACACATATGCCATACACAAGCTGCCTCAGCCATGGAAGGAAGTCCAAATCAAGAAACTTCAAGATATAGAAAGAGTGCCAGCAGGAAGCATGGCAGTCCTGATTCGGAAGAATGCCTTGATGGAAACACCCTATGGCCAAAGGATATTTTATCTAAAATTGAAAGTGATTTTTTGAGGGAATTTGAGCATGCTGAAGAGCTTGCCAAGACCATTGAGCCTGGAAACACTGAGATGCCAGATGCAATGGAGACAATATTTCAATCTGCCCTTGCTTTTGGAAGGCATGGGGGTGTAGAAGAACTCATGGGTGACATGGAAAGTGCAGCTGCATTGTATTCAAAAGCTGTCCGTCTGTTAGTTTTTCTTCTAGTGGAAGGACCATCCCTGATTCTTAATCCTCCTTTTTCTCTGACAAACTCGGATCGTTACAGACTTCGAAATTACATTGATATTCTTAATAACAGACAAGGTTATTCAAGGTCCCAGCGAATGGCACTACTGAAATGTGATGACAGTCAAGTTATTCTTTTGAGGGGGGTGAAATTGGTGATGCTGATGGGAGTAAAGGAGCACAAGGTAGATTGTAAAATTCAACATTTCGGTGGTTAG 2268 0.4361 MAQAVGRSRLVGEYVVGRQIGAGSFSVVWHGRHKVHGTEVAIKEIATLRLNKKLQESLMSEIFILKRINHPNIICLHDIIQVPGKIHLVLEYCKGGDLSLYIQRHGRVPEATAKHFMQQLAAGLLVLRDNNLIHRDLKPQNLLLSQNDEKAVLKIADFGFARSLQPRGLAETLCGSPLYMAPEIMQLQKYDAKADLWSVGAILFQLVTGRTPFTGNNQIQLLQNILKSTELQFPSDCPNLSFECKDLCQKLLRRNPVERLTFEEFFNHPFLSQKQREQDVEPLRSRSSSRLVGGFFSTVSDPLRRTEENYQEDCLPFILDDDSGGPEGSPSFSKKKSSIKSTYGFDLNSKLDKAESTSPISNNINSNSGFRTMTQRSQNTNRRLDNRNISRNLTDPLESPEQMFANPYPKVTDSLENIDQEYVLVPGPPIDVSSSSVGASRPSHTPYRSGSLPQESSSTITRPSAPMPIVGAHTNSMYQVGSSGSQDSAPGTSLGSMDIGDEQPSAHCMTRVKSLQQCASAITELVNEKMEAGKHLEAFSIQLVILAIWKQALHICHTQAASAMEGSPNQETSRYRKSASRKHGSPDSEECLDGNTLWPKDILSKIESDFLREFEHAEELAKTIEPGNTEMPDAMETIFQSALAFGRHGGVEELMGDMESAAALYSKAVRLLVFLLVEGPSLILNPPFSLTNSDRYRLRNYIDILNNRQGYSRSQRMALLKCDDSQVILLRGVKLVMLMGVKEHKVDCKIQHFGG* 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1048 755 ProSitePatterns Serine/Threonine protein kinases active-site signature. 132 144 IPR008271 GO:0004672|GO:0006468
Vra9g1048 755 SMART serkin_6 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1048 755 CDD STKc_ATG1_ULK_like 20 270 - -
Vra9g1048 755 MobiDBLite consensus disorder prediction 353 399 - -
Vra9g1048 755 Pfam Protein kinase domain 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1048 755 Gene3D Transferase(Phosphotransferase) domain 1 6 311 - -
Vra9g1048 755 ProSiteProfiles Protein kinase domain profile. 14 271 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1048 755 PANTHER SERINE/THREONINE-PROTEIN KINASE UNC-51-RELATED 8 709 IPR045269 GO:0004674|GO:0006914
Vra9g1048 755 PANTHER SERINE/THREONINE-PROTEIN KINASE ATG1C-LIKE 8 709 - -
Vra9g1048 755 SUPERFAMILY Protein kinase-like (PK-like) 10 464 IPR011009 -
Vra9g1048 755 MobiDBLite consensus disorder prediction 433 463 - -
Vra9g1048 755 MobiDBLite consensus disorder prediction 480 503 - -
Vra9g1048 755 MobiDBLite consensus disorder prediction 353 403 - -
Vra9g1048 755 ProSitePatterns Protein kinases ATP-binding region signature. 20 43 IPR017441 GO:0005524
Vra9g1048 755 MobiDBLite consensus disorder prediction 561 593 - -
Vra9g1048 755 MobiDBLite consensus disorder prediction 575 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1048 Vra-Chr9 13236041 13246158 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1048 10 271 CBL-interacting serine-threonine protein kinases AT2G30360 37.687 4.89e-53 188
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Group-Pl-3 Vra9g1048 Pkinase 2.1e-70 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1048 K08269 - gmx:100791596 1269.99