Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1042 ATGGCCAACCTCAACATGCTCCTCGTACTCTTGTCTTTGTTGCTGTTCCTTCTGATCCCAGTTTCTTCTCAGCCTAATCAGATCTTCTATGCTGGATTCAAGGGTTTGGATAGCAGCAACATGACCCTTAATGGTGTAGCAGAAATTGAGCCAAGTGGGGTACTGAAACTCACAAATGATTCAAGTAAAGTAATGGGTCATGCTTTTTATCCAACTGCTCTTCAGTTCAAGAACTCCAGTGATGGTAAAGCTTTCTCCTTTTCTTCCTCTTTTGCTTTGGCTATTGTTCCTGAGTTTCCAAAGCTTGGAGGGCATGGCCTTGCTTTTACAATTGCAACTTCCAAGGATCTGAAGGCTCTTCCAAGCCAGTATCTTGGTCTTCTTAACTCAAGTAGCATAGGGAACTTCTCCAACCACCTTTTTGCTGTCGAGTTTGACACAGCCCAAGATTTTGAGTTTGGGGACATCAATGATAACCATGTTGGAATTGACATCAATAGCTTGGTATCCAATGCTTCTGCTCCTGCTGGGTTCTACACTGGGGATCATGATTCAGACAAACAGAATCTCACTCTCAAAAGTGGGCAACCTATTCTGGTTTGGGTTGATTATGATTCTGCTCAAAGTGTTGTTAATGTCACAATTTCTGCATCTTCTACCAAACCCAGAAGACCACTCTTGTCTTTTCCGGTGGATCTTTCACCAATCCTTAGGGATTCCATGTATGTAGGGTTCTCTGCATCAACAGGGTTGCTTGCTAGCTCCCATTACATTTTGGGTTGGAGCTTCAAAATCAATGGACCAGCAACACCCCTTGATCTCTCTTCCCTCCCACAGCTTCCAGGGCCAAAGAGGAAACACACATCTCTGATAATTGGGGTTTCAGTGTCTGGAGCTGTTCTTGCATTGTTTGCTGTCTTACTCGGCTTCTACATGTACAGAAGGTACAAGAATGCTGATGTTATAGAAGCTTGGGAGCTTGAGATTGGGCCACACAGGTACTCCTACCAAGAGCTCAAGAAAGCAACAAAAGGTTTCAAGGACAAAGAGCTGCTTGGACAAGGTGGATTTGGGAGTGTCTACAAGGGAACATTGCCAAATTCCAACACCCAAGTTGCTGTCAAGAGAATCTCACATGACTCCAAACAGGGCCTGAGGGAATTTGTGTCAGAAATAGCCAGCATAGGCAGGCTTCGCCACCGGAATCTGGTTCAGCTTCTGGGGTGGTGTCGCCGGCGCGGTGACCTCCTCCTTGTGTATGATTTCATGGCTAATGGGAGCTTAGACAAGTACCTGTTTGATGAACCAGAAATAATCCTGAGTTGGGAGCAAAGGTTTAAGGTGGTCAAGGATGTTGCTTCTGCCCTTTTGTATCTGCATGAGGGCTATGAGCAGGTGGTGATACACAGAGATGTGAAGGCTAGCAATGTGCTGCTAGATGGAGAACTGAATGGAAGACTAGGAGATTTTGGATTAGCAAGGTTGTATGAACATGGTGCTAACCCAAGTACCACAAGGGTAGTGGGGACATTAGGGTATTTGGCACCTGAGGTGCCTAGGACAGGGAAGGCCACACCTAGCTCAGATGTTTTTGCATTTGGTGCACTTTTACTTGAGGTGGCATGTGGGATGAGGCCACTTGAGCCAAAGGCAATGCCAGAAGATTTGCTTTTGGTTGATTGTGTGTGGAACAAGTACAAGCAAGGGAGAATACTTGATGTGGTGGACCCTAGACTCAATGGTGTTTTTAATGAAAGAGAGGTGCTGATGGTGTTGAAATTAGGGCTTCTATGTTCAAATGGTTCTCCCACTGCTAGGCCTAGCATGAAACAGGTGGTGAGGTTCTTGGAGGGAGAAGTTGGTGTGCCTGATGAGTTGAGAAGGCCAGGAATGACAGGTTCTCAAGAGGGTTTTGATCAGTGCTTGCACTTACTTGAATCTTCTTCTTTTCATCAGATGAGCAGAAGCACCTATGGTGGTACTTCTCCTTCTTTTTTTACTGATACATCACTCTTTACTCCCACTGCTAAAGGAGAAACAATGTGA 2046 0.4536 MANLNMLLVLLSLLLFLLIPVSSQPNQIFYAGFKGLDSSNMTLNGVAEIEPSGVLKLTNDSSKVMGHAFYPTALQFKNSSDGKAFSFSSSFALAIVPEFPKLGGHGLAFTIATSKDLKALPSQYLGLLNSSSIGNFSNHLFAVEFDTAQDFEFGDINDNHVGIDINSLVSNASAPAGFYTGDHDSDKQNLTLKSGQPILVWVDYDSAQSVVNVTISASSTKPRRPLLSFPVDLSPILRDSMYVGFSASTGLLASSHYILGWSFKINGPATPLDLSSLPQLPGPKRKHTSLIIGVSVSGAVLALFAVLLGFYMYRRYKNADVIEAWELEIGPHRYSYQELKKATKGFKDKELLGQGGFGSVYKGTLPNSNTQVAVKRISHDSKQGLREFVSEIASIGRLRHRNLVQLLGWCRRRGDLLLVYDFMANGSLDKYLFDEPEIILSWEQRFKVVKDVASALLYLHEGYEQVVIHRDVKASNVLLDGELNGRLGDFGLARLYEHGANPSTTRVVGTLGYLAPEVPRTGKATPSSDVFAFGALLLEVACGMRPLEPKAMPEDLLLVDCVWNKYKQGRILDVVDPRLNGVFNEREVLMVLKLGLLCSNGSPTARPSMKQVVRFLEGEVGVPDELRRPGMTGSQEGFDQCLHLLESSSFHQMSRSTYGGTSPSFFTDTSLFTPTAKGETM* 682
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1042 681 Pfam Protein kinase domain 346 550 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1042 681 Pfam Legume lectin domain 29 277 IPR001220 GO:0030246
Vra9g1042 681 CDD STKc_IRAK 352 618 - -
Vra9g1042 681 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.4 7 655 - -
Vra9g1042 681 SMART serkin_6 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1042 681 PANTHER - 7 655 - -
Vra9g1042 681 ProSitePatterns Protein kinases ATP-binding region signature. 352 375 IPR017441 GO:0005524
Vra9g1042 681 Gene3D Transferase(Phosphotransferase) domain 1 423 628 - -
Vra9g1042 681 SUPERFAMILY Concanavalin A-like lectins/glucanases 33 285 IPR013320 -
Vra9g1042 681 SUPERFAMILY Protein kinase-like (PK-like) 328 638 IPR011009 -
Vra9g1042 681 Gene3D Phosphorylase Kinase; domain 1 331 422 - -
Vra9g1042 681 CDD lectin_legume_LecRK_Arcelin_ConA 30 267 IPR001220 GO:0030246
Vra9g1042 681 ProSiteProfiles Protein kinase domain profile. 346 616 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g1042 681 Gene3D - 28 267 - -
Vra9g1042 681 ProSitePatterns Serine/Threonine protein kinases active-site signature. 467 479 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1042 Vra-Chr9 13136935 13139469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1042 21 680 Receptor kinase-like Gene Family AT3G55550 58.507 0.0 766
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Vra9g1042 Pkinase 8.4e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1042 - - gmx:100801247 1150.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra4g0050 4 1618532 1621132 Vra9g1042 9 13136935 13139469 ECH
Vra9g1042 9 13136935 13139469 Vra9g1042 9 13136935 13139469 ECH