Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1038 ATGGAACAGGGTCAATGTTGGACTAAGAGAAAGTACTCTTTGAGCTCTAGTCTTAGTTCACCAACCAACCCTTCCTGTGGTGACTCATGGGAAGAACAGGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGTGTGTGGCCTCCAAGATCATACTCTTGTAGCTTCTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCAAGCCCCCACAATGAAATTCTATGTCATGACCTTCAAACTCAACTCCATATGCCAGTTCAAAGTCCTTTTGCTTCTTCTTTGGATGATTACCTATACCCGTCTCCTGTTTGTGGATTGCCTTATAGAAAAACTAAACCTAATTCTTATCATGATTTTGTTGCTTCACCTTCTTCACCCTCACATTCGAAGGCCTTATTGGCTGCATCAGTTAATAGTGGTAACTCCAGAGATGAAACCATGATTCCATTTTATGATTCCAGTGTTCTCCACAAGATTTCTCCTATCAGTAACTCTTCCGAATCATGGCCAAGTTTAGCTGAAGATCATAGATTATATTCATGTAAGTTCCATCCTCAAGCTGATACCAAGAAACCCTCCAAGGGAATAATGGATTCTAGATGTAGGGGTAACAAGGGCGATACTGATGATATTGATGGGGATATGATCTTAAATTCAGTTGTGTGTAGCACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAGGCAGATCATATCAGTTACAAGAAGAGGAAAACAGATGCTTCCTCATCACCATTTTCACCAAAGTCAAGCTCAGTTGACAGACATCATGTGCAGACAAAGATGCTTGAATTTAGCCCTAGCTCAGTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG 939 0.4207 MEQGQCWTKRKYSLSSSLSSPTNPSCGDSWEEQAFAEDAANSLGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLQTQLHMPVQSPFASSLDDYLYPSPVCGLPYRKTKPNSYHDFVASPSSPSHSKALLAASVNSGNSRDETMIPFYDSSVLHKISPISNSSESWPSLAEDHRLYSCKFHPQADTKKPSKGIMDSRCRGNKGDTDDIDGDMILNSVVCSTHPSLQFESTKEADHISYKKRKTDASSSPFSPKSSSVDRHHVQTKMLEFSPSSVEELDLELRLGNRSKV* 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1038 312 Gene3D Classic Zinc Finger 49 101 - -
Vra9g1038 312 Pfam C2H2-type zinc finger 53 77 - -
Vra9g1038 312 MobiDBLite consensus disorder prediction 261 287 - -
Vra9g1038 312 PANTHER OS07G0101800 PROTEIN 1 312 - -
Vra9g1038 312 SUPERFAMILY beta-beta-alpha zinc fingers 50 79 IPR036236 -
Vra9g1038 312 PANTHER C2H2 AND C2HC ZINC FINGER PROTEIN 1 312 - -
Vra9g1038 312 MobiDBLite consensus disorder prediction 266 280 - -
Vra9g1038 312 ProSiteProfiles Zinc finger C2H2 type domain profile. 53 80 IPR013087 -
Vra9g1038 312 ProSitePatterns Zinc finger C2H2 type domain signature. 55 75 IPR013087 -
Vra9g1038 312 SMART c2h2final6 53 75 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1038 Vra-Chr9 13090431 13092175 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1038 29 84 C2H2 Transcription Factor Family AT2G37740 82.143 7.40e-26 102
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra9g1038 zf-C2H2_6 1.4e-05 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1038 - - gmx:100801427 508.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0670 6 6221946 6222584 Vra9g1038 9 13090431 13092175 ECH
Vra4g0046 4 1510720 1513405 Vra9g1038 9 13090431 13092175 ECH
Vra9g1038 9 13090431 13092175 Vra6g0670 6 6221946 6222584 ECH
Vra9g1038 9 13090431 13092175 Vra9g1038 9 13090431 13092175 ECH