Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra9g1038 | ATGGAACAGGGTCAATGTTGGACTAAGAGAAAGTACTCTTTGAGCTCTAGTCTTAGTTCACCAACCAACCCTTCCTGTGGTGACTCATGGGAAGAACAGGCTTTTGCAGAAGATGCTGCTAATTCTCTTGGTGGCTGTGTGTGGCCTCCAAGATCATACTCTTGTAGCTTCTGCAGAAGAGAGTTTAGGTCAGCACAGGCTCTAGGTGGCCACATGAATGTTCATAGAAGGGATAGAGCAAGACTAAAGCAACAACCCTCAAGCCCCCACAATGAAATTCTATGTCATGACCTTCAAACTCAACTCCATATGCCAGTTCAAAGTCCTTTTGCTTCTTCTTTGGATGATTACCTATACCCGTCTCCTGTTTGTGGATTGCCTTATAGAAAAACTAAACCTAATTCTTATCATGATTTTGTTGCTTCACCTTCTTCACCCTCACATTCGAAGGCCTTATTGGCTGCATCAGTTAATAGTGGTAACTCCAGAGATGAAACCATGATTCCATTTTATGATTCCAGTGTTCTCCACAAGATTTCTCCTATCAGTAACTCTTCCGAATCATGGCCAAGTTTAGCTGAAGATCATAGATTATATTCATGTAAGTTCCATCCTCAAGCTGATACCAAGAAACCCTCCAAGGGAATAATGGATTCTAGATGTAGGGGTAACAAGGGCGATACTGATGATATTGATGGGGATATGATCTTAAATTCAGTTGTGTGTAGCACTCACCCATCTTTGCAGTTTGAGAGTACTAAAGAGGCAGATCATATCAGTTACAAGAAGAGGAAAACAGATGCTTCCTCATCACCATTTTCACCAAAGTCAAGCTCAGTTGACAGACATCATGTGCAGACAAAGATGCTTGAATTTAGCCCTAGCTCAGTGGAAGAGCTAGATCTGGAGTTAAGGCTTGGTAACAGGTCCAAGGTATAG | 939 | 0.4207 | MEQGQCWTKRKYSLSSSLSSPTNPSCGDSWEEQAFAEDAANSLGGCVWPPRSYSCSFCRREFRSAQALGGHMNVHRRDRARLKQQPSSPHNEILCHDLQTQLHMPVQSPFASSLDDYLYPSPVCGLPYRKTKPNSYHDFVASPSSPSHSKALLAASVNSGNSRDETMIPFYDSSVLHKISPISNSSESWPSLAEDHRLYSCKFHPQADTKKPSKGIMDSRCRGNKGDTDDIDGDMILNSVVCSTHPSLQFESTKEADHISYKKRKTDASSSPFSPKSSSVDRHHVQTKMLEFSPSSVEELDLELRLGNRSKV* | 313 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra9g1038 | 312 | Gene3D | Classic Zinc Finger | 49 | 101 | - | - | |
Vra9g1038 | 312 | Pfam | C2H2-type zinc finger | 53 | 77 | - | - | |
Vra9g1038 | 312 | MobiDBLite | consensus disorder prediction | 261 | 287 | - | - | |
Vra9g1038 | 312 | PANTHER | OS07G0101800 PROTEIN | 1 | 312 | - | - | |
Vra9g1038 | 312 | SUPERFAMILY | beta-beta-alpha zinc fingers | 50 | 79 | IPR036236 | - | |
Vra9g1038 | 312 | PANTHER | C2H2 AND C2HC ZINC FINGER PROTEIN | 1 | 312 | - | - | |
Vra9g1038 | 312 | MobiDBLite | consensus disorder prediction | 266 | 280 | - | - | |
Vra9g1038 | 312 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 53 | 80 | IPR013087 | - | |
Vra9g1038 | 312 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 55 | 75 | IPR013087 | - | |
Vra9g1038 | 312 | SMART | c2h2final6 | 53 | 75 | IPR013087 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra9g1038 | Vra-Chr9 | 13090431 | 13092175 | Dispersed/Transposed |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra9g1038 | 29 | 84 | C2H2 Transcription Factor Family | AT2G37740 | 82.143 | 7.40e-26 | 102 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vra9g1038 | zf-C2H2_6 | 1.4e-05 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra9g1038 | - | - | gmx:100801427 | 508.064 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Vra6g0670 | 6 | 6221946 | 6222584 | Vra9g1038 | 9 | 13090431 | 13092175 | ECH | |
Vra4g0046 | 4 | 1510720 | 1513405 | Vra9g1038 | 9 | 13090431 | 13092175 | ECH | |
Vra9g1038 | 9 | 13090431 | 13092175 | Vra6g0670 | 6 | 6221946 | 6222584 | ECH | |
Vra9g1038 | 9 | 13090431 | 13092175 | Vra9g1038 | 9 | 13090431 | 13092175 | ECH |