Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1029 ATGGGACGCCGGAAAACGATGACGATGGACTGGGACGGCCTTGGCGATGTTGACGACGATGATGCCTTCTTCGAGTCATACAGCCGCCTCTCCACCGCCGCCCCCCTCGACCTGGCCTCCGACGACGACGATGACGACGACGATTTCGACGACCCCCGCCTTTCCTTCGCCTCAGCCATCTCCTCCGCTCCCTCGCGTCGAAACAGCCTTTCCCCCACGATGGATGCTGCTCCAGATTACGGCGTATGGATGGCGGCCCCCCTCTCAATTGACGAGCGCCGAAAGCGTTTGCTCCGCGGCATGGGTCTGGACTCCGAAAAATCAACACTTCCGTCTATTAGCGCTAATCCCGTTACCGATACACCTATCGTGTCAACGACGCCGGTTACCGATTCAACGACGCCGGTTACCGATTCAACGACGCCGGTTTCTGAGACAACGACAGCGGTTGCCGTTTCGACAGAGAAGATGTTTTCAGACAACTCCTCTCATCAATTAGTTCTTGTTCGTTCGCGATCTGAGGGAGACATCGAGTTGTTTTCGTTGGAGAGGTCGAGAAGAGAACATTTCATCGGAAAGTGTTCGAAGCAGAGGTTGACGAGAACCGCGACGGAGGTGTTCGTCCACCGCGCTCCGCCGGGAACCAGAAACAGGGCGGTGTTGAGGGATTCCGATGAAGCAGCGCAGTCCAAGCCGAAAAGCGCGAAGAATGAGGATTTGGGAGTGCGAGCATTTTTCCTTATAAAGAACTTGGACACGGGGAAGGAGTTTATTGTGAACGAATTTACCGAAAACGGTGCGTGGAACAGGCTGAGTGATTTACAGACGGGGAGGCAGTTAACGATGGATGAGTTTGAAAAGACGGTGGGGAAATCGCGCGTGGTTAGCGAGCTTATGCGACGCAGTACGAGGAGCGAGAATTTGTCGCGGAAGCTGACTTCGAGTTCGTACATTTCGAGAAGTTTGAGGATGAGCAAGAGAAGAGGGGTTGCATTTCTGAAGAACATAAAGGGCGTGGCCAGTGGGTTCATTGGGGAGAGAGAGGGTTTTGGTAACGCAGCCGCCGCAACGGCGGCGGCGGAGAAGAGTCAGTGGGTGCGAGTGCGGCAGAGCGGGAAGTCGCACAAGGAGGTGTCGGCGTTGCATCTGTGTCAGGAGCTTCAGGGACACGAGGGGTCGATTTGGACGATTAGGTTTAGTTTGGATGGGAGGTTTCTGGCGAGTGCAGGTGAGGACAAGGTGATACACGTGTGGGAAGTGCAGGAGTGTGAGGTTATGTCGTTGAGGTTCGACGAGGGGAGTTTCACACCTATTCACCCTTCCTTGCTTGCCTCCAACGACGGTTCGCCTTTCTCTCCGGCGGCGGCGGCGGCTGACAAGAAGAAGAAGGGCAAATTTGGAACGAAAAAGGGCCCTGCCATTCCTGACTATGTTCATGTTCCTGAAACTGTGTTCTCACTCTCCGACAAACCCTTCTGCAGTTTCCAAGGACATTTGGATGATGTTTTAGATTTGTCATGGTCGAGATCTAAGCTACTTCTGTCATCTTCAATGGATAAAACAGTGAGATTATGGAACTTGGAGACTAGGAGTTGCTTGTACAGGTTTCCCCACAGTGACTATGTAACCTGCATACAATTCAATCCTCTGAAAGATGATGTTTTCATCAGTGGTTCGCTGGACGCTAGGGTCAGAATATGGAGCATTCCTGAACGCCATGTTGTCGATTGGATTGATCTCAATGAAATGGTTACTGCACTCTCCTTTACACCTGACGGTCAGGGTGCTATTGTTGGTACCCACAAGGGCGGTTGTCGTACATATAGCACAAAAGATTGCAAACTAACTCAAACAGGAACAATTGAGATTTCACAAAAGAAATCCCAACTAAGAAAAGTCACTGGTTTTCAGTTTGTTCCAGGCAAACCATCAGAAATTCTTGTAACTTCAGCAGATTCCAGAATAAGAATATTGGAAGGTTCAGAAGTAGTTCAAAAGTACAAAGGTTTTCGTAATGCAAACAGTCAAATTGCAGCTTCATTTAGTCCAGATGGAAGATATATTATAAGTGCAAGTGAAGATTCTGAAGTATATGTGTGGAAGCATGAAGATCATAGAAGTGCAGGCAGTGGAAAATTCAAAAGTATGCTAGTTACTCGTGCTCACGAGCACTTCACCTGCAAAGATGTTTCAGTAGCAATACCATGGAATTGTACCGTCAAAGGTGAACCTCCGCTACTGCCAGTGCCTGTCAAAAAGCATTCAAAACGTTCTTTGGTAGGTTCTAATGGTGGGGAAGAAACACCATCGCCATCTTCTGCGAATGGTAGTAAGAAAACTCTTCCACCACTTCCCAGGAAAAGTAATAGCCTTAACTCAGAAGGAGCTTCAAATTCCCCTAGGGAAGAACTTGGCACAGATTCAGGATTTAGTGCTTCTTTTAGAACTGCATCATCATCATCATCCTCATCTAGGTATAGTGATGCACTTTCTTCAAGTGGATCATTTTCTTCATCTTTTTCATTATTGGACAGTGGCCACATTTCCTCCACAGTTGTTCCTACGGCGTGGGGTTTGGTAATTGTGACAGCTGGGTTAGGAGGTGAGATCAGATGCTATCAAAATTTTGGGTTACCAAGAAGGATTAGACAATCTCATCTTTTTGGAAGCTACAATAGTTTTACTAACACTTAG 2694 0.4852 MGRRKTMTMDWDGLGDVDDDDAFFESYSRLSTAAPLDLASDDDDDDDDFDDPRLSFASAISSAPSRRNSLSPTMDAAPDYGVWMAAPLSIDERRKRLLRGMGLDSEKSTLPSISANPVTDTPIVSTTPVTDSTTPVTDSTTPVSETTTAVAVSTEKMFSDNSSHQLVLVRSRSEGDIELFSLERSRREHFIGKCSKQRLTRTATEVFVHRAPPGTRNRAVLRDSDEAAQSKPKSAKNEDLGVRAFFLIKNLDTGKEFIVNEFTENGAWNRLSDLQTGRQLTMDEFEKTVGKSRVVSELMRRSTRSENLSRKLTSSSYISRSLRMSKRRGVAFLKNIKGVASGFIGEREGFGNAAAATAAAEKSQWVRVRQSGKSHKEVSALHLCQELQGHEGSIWTIRFSLDGRFLASAGEDKVIHVWEVQECEVMSLRFDEGSFTPIHPSLLASNDGSPFSPAAAAADKKKKGKFGTKKGPAIPDYVHVPETVFSLSDKPFCSFQGHLDDVLDLSWSRSKLLLSSSMDKTVRLWNLETRSCLYRFPHSDYVTCIQFNPLKDDVFISGSLDARVRIWSIPERHVVDWIDLNEMVTALSFTPDGQGAIVGTHKGGCRTYSTKDCKLTQTGTIEISQKKSQLRKVTGFQFVPGKPSEILVTSADSRIRILEGSEVVQKYKGFRNANSQIAASFSPDGRYIISASEDSEVYVWKHEDHRSAGSGKFKSMLVTRAHEHFTCKDVSVAIPWNCTVKGEPPLLPVPVKKHSKRSLVGSNGGEETPSPSSANGSKKTLPPLPRKSNSLNSEGASNSPREELGTDSGFSASFRTASSSSSSSRYSDALSSSGSFSSSFSLLDSGHISSTVVPTAWGLVIVTAGLGGEIRCYQNFGLPRRIRQSHLFGSYNSFTNT* 898
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1029 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 535 569 - -
Vra9g1029 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 535 569 IPR001680 GO:0005515
Vra9g1029 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 680 710 IPR001680 GO:0005515
Vra9g1029 897 PRINTS G protein beta WD-40 repeat signature 406 420 IPR020472 -
Vra9g1029 897 PRINTS G protein beta WD-40 repeat signature 513 527 IPR020472 -
Vra9g1029 897 PRINTS G protein beta WD-40 repeat signature 555 569 IPR020472 -
Vra9g1029 897 Pfam WD domain, G-beta repeat 667 701 IPR001680 GO:0005515
Vra9g1029 897 Pfam WD domain, G-beta repeat 385 418 IPR001680 GO:0005515
Vra9g1029 897 Pfam WD domain, G-beta repeat 491 526 IPR001680 GO:0005515
Vra9g1029 897 Pfam WD domain, G-beta repeat 531 568 IPR001680 GO:0005515
Vra9g1029 897 ProSitePatterns Trp-Asp (WD) repeats signature. 513 527 IPR019775 -
Vra9g1029 897 SUPERFAMILY WD40 repeat-like 381 704 IPR036322 GO:0005515
Vra9g1029 897 PANTHER WD REPEAT DOMAIN 44 6 884 IPR040324 -
Vra9g1029 897 MobiDBLite consensus disorder prediction 761 810 - -
Vra9g1029 897 SMART WD40_4 488 526 IPR001680 GO:0005515
Vra9g1029 897 SMART WD40_4 570 609 IPR001680 GO:0005515
Vra9g1029 897 SMART WD40_4 660 701 IPR001680 GO:0005515
Vra9g1029 897 SMART WD40_4 623 659 IPR001680 GO:0005515
Vra9g1029 897 SMART WD40_4 833 874 IPR001680 GO:0005515
Vra9g1029 897 SMART WD40_4 380 419 IPR001680 GO:0005515
Vra9g1029 897 SMART WD40_4 529 568 IPR001680 GO:0005515
Vra9g1029 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 495 535 IPR001680 GO:0005515
Vra9g1029 897 Gene3D - 358 462 IPR015943 GO:0005515
Vra9g1029 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 387 421 - -
Vra9g1029 897 Gene3D - 472 742 IPR015943 GO:0005515
Vra9g1029 897 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 495 529 - -
Vra9g1029 897 MobiDBLite consensus disorder prediction 108 143 - -
Vra9g1029 897 PANTHER TRANSDUCIN/WD40 REPEAT-LIKE SUPERFAMILY PROTEIN 6 884 - -
Vra9g1029 897 ProSiteProfiles Trp-Asp (WD) repeats profile. 387 428 IPR001680 GO:0005515
Vra9g1029 897 MobiDBLite consensus disorder prediction 745 810 - -
Vra9g1029 897 ProSitePatterns Trp-Asp (WD) repeats signature. 406 420 IPR019775 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1029 Vra-Chr9 12969613 12974855 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1029 487 698 U-box Gene Family AT2G33340 24.554 5.47e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g1029 K20241 - gmx:100779364 1036.17