Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra9g1023 | ATGACTGAGGAGAAATCAGAGCAGCTTTGTTTGAAGAATAAACAAACCTATGCTCCTTCTAGTTCTTCTGTATCAGATGGAAATGACAGTGCTATTCCCTCATCATCAAGGAAAACGGGATCAGCATTGCCGTGTAATAGGAGAACCACTGGTCCTGTTAGACGGGTAAAGGATGGTTGGACGGAAAAGGAGGATGAAACATTAAAGAATGCTGTTGAAGTTTTTAATGGCAAGAATTGGAAGAAAATAGCTGAGTTTTTTCCGGATAAATCAGAAGTTCAATGTCTTCACAGATGGAAAAAAGTTCTTAATCCTGAACTTGTTAAAGGACATTGGACAAAGGAGGAGGATGATAAAATAATTGAACTGGTGTCTATACATGGACCTACAAAATGGTCTTTGATATCCCAATCATTGCCCGGTCGAATAGGAAAACAGTGCCGAGAACGATGGTGCAACCATCTTAGTCCAGACATAAAGAAGGATCCCTGGACTTTGGAGGAGGAATTAGCCCTTATGAAAGCTCATTGTACACATGGCAACAAATGGGCTGAAATAGCCAAGGTTCTATGTGGAAGGACTGACAATGCAATAAAGAATCACTGGAATGGTTCTTTGAAGAAAAAGAAGGATTTTTATTTAGCTAATGGAAGACTTCCGCCCATTCCAAAGAGCAGTATGGAAGTTGCTATCAAAGATACAGTTAAACATTCTACAACTAACACAATTCATGTTTATTCGAATAAAGGATTAGATGCCACTGTTGCATCGTCATCTAAAGCTACAGACATTACTAAGCTTGATAACAGTGATAAGAATCAACTAGAGTCCTCTGGAATAGTTGGAGAGGTTGGAGATTCTTCTAGTGTTCCACCAAAAAAAAGTGCTGATTCTGATTGTGTACACTGTCATAGATTATTCCACAAAGGTCTCTGCTGTAGTAACTTGGAATCAGGGTCGGGAGACAATTTTAAAATAAACAGGGAGCCAAAATTTGTGAATCCTGGACTCAATGCTAACCAGAGAATTGATCATTGTCTGAATTATAGTGATATGAACGGTGACAGATCAACTAGAATTTTTTATTCAAAGGAAAGTCGAACGTTTGGTTCTTTTTGTCATGAATCATCACGGCTTGATAATCCACATCCTTCAGAATCTCTTAATTTTAACATGTCTTCTGGCTTGCAGAATGAAGACATTTCTTCACCAATGAAGTCATCTGCTGGTTTCGTAACTCCACCTCATGTAAAGGGAATTGAATCATGCTCAGAATCTATTGAATCAATACTGAGAAAGGCAGCTAAAACATTCCCAACTCCTTCAATAATAAGGAAGAGAAGAAATGGAGGTGAATTACCTGCCACTCCCAGAAAGCTTGCAAATGCAGTTAATTCACATGTTTGTAATGAAGAAGTGAGAACAAATGATATTTCTTGTTCTGGAGTTGTGGGGTTATCTGTCAGTCCAGCTAGCCATGGCCATGGGAGTAATATTATTCAAAATAATGCTTTGAACATGACTCCTCCATACCGATTACGATCCAAGCAAACAGCTATTAAGTCTTTGACGAAACAACTTGATTCTGCATTTTACATGGAGAGAAGTGCTTCTGATATGGAAAAGTCTACTGAGATAGTATTGTGA | 1647 | 0.3843 | MTEEKSEQLCLKNKQTYAPSSSSVSDGNDSAIPSSSRKTGSALPCNRRTTGPVRRVKDGWTEKEDETLKNAVEVFNGKNWKKIAEFFPDKSEVQCLHRWKKVLNPELVKGHWTKEEDDKIIELVSIHGPTKWSLISQSLPGRIGKQCRERWCNHLSPDIKKDPWTLEEELALMKAHCTHGNKWAEIAKVLCGRTDNAIKNHWNGSLKKKKDFYLANGRLPPIPKSSMEVAIKDTVKHSTTNTIHVYSNKGLDATVASSSKATDITKLDNSDKNQLESSGIVGEVGDSSSVPPKKSADSDCVHCHRLFHKGLCCSNLESGSGDNFKINREPKFVNPGLNANQRIDHCLNYSDMNGDRSTRIFYSKESRTFGSFCHESSRLDNPHPSESLNFNMSSGLQNEDISSPMKSSAGFVTPPHVKGIESCSESIESILRKAAKTFPTPSIIRKRRNGGELPATPRKLANAVNSHVCNEEVRTNDISCSGVVGLSVSPASHGHGSNIIQNNALNMTPPYRLRSKQTAIKSLTKQLDSAFYMERSASDMEKSTEIVL* | 549 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra9g1023 | 548 | Gene3D | - | 56 | 107 | - | - | |
| Vra9g1023 | 548 | SUPERFAMILY | Homeodomain-like | 55 | 110 | IPR009057 | - | |
| Vra9g1023 | 548 | MobiDBLite | consensus disorder prediction | 11 | 46 | - | - | |
| Vra9g1023 | 548 | ProSiteProfiles | Myb-like domain profile. | 104 | 155 | IPR001005 | - | |
| Vra9g1023 | 548 | PANTHER | MYB PROTEIN-RELATED | 22 | 302 | - | - | |
| Vra9g1023 | 548 | PANTHER | MYB PROTEIN-RELATED | 396 | 477 | - | - | |
| Vra9g1023 | 548 | MobiDBLite | consensus disorder prediction | 267 | 291 | - | - | |
| Vra9g1023 | 548 | CDD | SANT | 112 | 155 | IPR001005 | - | |
| Vra9g1023 | 548 | SMART | sant | 160 | 208 | IPR001005 | - | |
| Vra9g1023 | 548 | SMART | sant | 108 | 157 | IPR001005 | - | |
| Vra9g1023 | 548 | SMART | sant | 56 | 105 | IPR001005 | - | |
| Vra9g1023 | 548 | CDD | SANT | 60 | 103 | IPR001005 | - | |
| Vra9g1023 | 548 | Pfam | Myb-like DNA-binding domain | 112 | 170 | - | - | |
| Vra9g1023 | 548 | Pfam | Myb-like DNA-binding domain | 59 | 103 | IPR001005 | - | |
| Vra9g1023 | 548 | Gene3D | - | 162 | 228 | - | - | |
| Vra9g1023 | 548 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 160 | 210 | IPR017930 | - | |
| Vra9g1023 | 548 | SUPERFAMILY | Homeodomain-like | 106 | 202 | IPR009057 | - | |
| Vra9g1023 | 548 | PANTHER | MYB-RELATED PROTEIN B-LIKE | 22 | 302 | - | - | |
| Vra9g1023 | 548 | PANTHER | MYB-RELATED PROTEIN B-LIKE | 396 | 477 | - | - | |
| Vra9g1023 | 548 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 104 | 159 | IPR017930 | - | |
| Vra9g1023 | 548 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 60 | 103 | IPR017930 | - | |
| Vra9g1023 | 548 | Gene3D | - | 108 | 161 | - | - | |
| Vra9g1023 | 548 | MobiDBLite | consensus disorder prediction | 1 | 58 | - | - | |
| Vra9g1023 | 548 | CDD | SANT | 163 | 203 | IPR001005 | - | |
| Vra9g1023 | 548 | ProSiteProfiles | Myb-like domain profile. | 57 | 103 | IPR001005 | - | |
| Vra9g1023 | 548 | ProSiteProfiles | Myb-like domain profile. | 156 | 206 | IPR001005 | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra9g1023 | Vra-Chr9 | 12812295 | 12818420 | Dispersed/Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra9g1023 | 3 | 545 | MYB Transcription Factor Family | AT3G09370 | 40.721 | 9.45e-115 | 348 |
Transcription factors information
| Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
|---|---|---|---|---|---|---|---|
| TF | MYB | Vra9g1023 | Myb_DNA-bind_6 | 2.2e-17 | CL0123 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra9g1023 | K09422 | - | gmx:100777236 | 640.958 |