Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g1005 ATGCCTTCCTCTTCCACCACCATAGTTTCTAGATGCCTCGTCCATCCCGACCACAAATCCACCATCAAACCACTCAAACTCTCTGTTTCTGACCTTCCAATGTTGTCGTGTCACTACATACAAAAGGGCGTCTTGCTCACTGCCCCAACCTCTTCCCAAGACCTTATTCTCTCTCTCAAACACTCTCTCTCCGCCGCTCTCTCCCACTTCCCTGCCCTCGCCGGCCGTCTTTCCACTGACTACCAGGGTTACGTCCACATCGACTGCAACGACGCTGGCGTCGACTTCATCCATGCCAAGGCCAAGCACTTAACTCTGAACGCCGTCGTTTCGCCCACCCTCGTTGATGTTCACCCTTGCTTCAAGGAGTTCTTCGCCTATGACATGATGATCTCCTACGCCGGTCACCACAATCCCCTCGCTGCCATCCAAGTCACCGAGCTCGCCGATGCCGTCTTCGTTGGCTGCACCGTCAACCACGCTGTCACCGACGGCACCTCCTTCTGGCATTTCTTCAACACCTTCGCCGCCATCAACAAAGGCGGCGCCGCCAAGAAAGTACTCCGCGCGCCGGACTTCACGCGCGAAACCGTAATCAATTCCGACGCTGTCCTCTTTGTGCCCGCCGGCGGCCCAGCCCTCACCTTTGACGCCAAGGCACCCATCCGCGAACGCATCTTCCATTTCTCCAGAGAATCCATTCAGAAACTCAAACTAAGAGCCAACGCCAAATCCAACGAACTAACGGAAGTAATGGAAAAACAAGTGAATGACGGTTGGAACATCGTTAACGGTAAAGTTATCGGAAAGGATAACGGTAACGGAAGAAACGAGATCTCGTCGTTTCAGTCGTTATCTGCTCAGCTCTGGCGTGCGGTGACACGTGCGAGGAAATTCAACGACCCTGCCAAAACGTCGACGTTTCGGATGGCGGTTAATTTCCGCCATCGGTTGGAGCCGAAGATGGACCCGTTTTACTTCGGTAATGCGATTCAGAGCATTCCAACCGTCGCAACCGTCAGGGATATCCTCTCACACGATCTGCGTTTCTGCGCGGAGTTGCTGCACCGAAACGTTATCGCCCACGATGACGCAACGGTGCGACGTGGCATAGAGGATTGGGAGAACGCGCCGAGGCTGTTTCCTTTAGGGAACTTCGACGGCGCGATGATCACCATGGGAAGCTCTCCGCGTTTTCCCATGTACGACAACGACTTCGGCTGGGGAAGGCCTGTCGCGATTCGGAGTGGCAAAGCGAACAAATTCGACGGGAAAATCTCGGCGTTTCCAGGGAGAGAAGGAAACGGAAGCGTGGATCTGGAAGTCGTTTTGGCTCCGGAGACCATGGCGGGGCTAGAAAACGACATGGAGTTTATGCAATACGTAACGCAGGTGGTGTGA 1401 0.5446 MPSSSTTIVSRCLVHPDHKSTIKPLKLSVSDLPMLSCHYIQKGVLLTAPTSSQDLILSLKHSLSAALSHFPALAGRLSTDYQGYVHIDCNDAGVDFIHAKAKHLTLNAVVSPTLVDVHPCFKEFFAYDMMISYAGHHNPLAAIQVTELADAVFVGCTVNHAVTDGTSFWHFFNTFAAINKGGAAKKVLRAPDFTRETVINSDAVLFVPAGGPALTFDAKAPIRERIFHFSRESIQKLKLRANAKSNELTEVMEKQVNDGWNIVNGKVIGKDNGNGRNEISSFQSLSAQLWRAVTRARKFNDPAKTSTFRMAVNFRHRLEPKMDPFYFGNAIQSIPTVATVRDILSHDLRFCAELLHRNVIAHDDATVRRGIEDWENAPRLFPLGNFDGAMITMGSSPRFPMYDNDFGWGRPVAIRSGKANKFDGKISAFPGREGNGSVDLEVVLAPETMAGLENDMEFMQYVTQVV* 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g1005 466 Gene3D - 6 205 IPR023213 -
Vra9g1005 466 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 5 463 - -
Vra9g1005 466 Coils Coil 234 254 - -
Vra9g1005 466 Gene3D - 221 459 IPR023213 -
Vra9g1005 466 Pfam Transferase family 7 459 - -
Vra9g1005 466 PANTHER ANTHOCYANIN 5-AROMATIC ACYLTRANSFERASE 5 463 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g1005 Vra-Chr9 12407715 12409624 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g1005 8 454 Monolignol Biosynthesis Gene Families AT5G48930 26.840 1.17e-34 132
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra6g0613 6 5564355 5566214 Vra9g1005 9 12407715 12409624 ECH
Vra9g1005 9 12407715 12409624 Vra9g1005 9 12407715 12409624 ECH