Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0994 ATGGAGTTCGATCCATGGAGTTCTAGTATATGTCCCATAATCCCCTACTTGAATCCACACGCTCAAACCATGTTCCCATCCCAAAGCTCCATTTTCATTCCTCCATCTCAACCTATCATGTTTAACCCTAACCATGTTTTCCACCATTTTCAAGACCACAACCCTCCGTTTCTGATGGACGGTTCCAACTCCATCGTAACCCCCATGTATGGGATACCAACCCCTTCTTTGGGTGATGGTTCTTTTGTTAACATTAACAGTCACCAGCCTGTGATGTTAGCACCAAAGAACAACAGCAAAATTGAAGAAGGCAAAATCATATGGGATTTTTCCCAGAAAACTATGGTTCATCCTTTTGAAACCTCTTCTCCCATGTCACCATCATCTCCTTTCTGTCTCTCTAATGAGTATGGATTGGGTATGAGTGAATTTCACAGCGACACTTATCGAAGGATGGTAGAGATGGAAAAGAATACCAACAATGCTACTCATAATATAATCAAAGGGCAGTGGACTCCCGAAGAAGACAGTGCTCTTGTGGAGTTGGTGAATGAATTTGGAGCGAAGAAATGGTCAGAAATTGCAAAGTTGATGTGCGGCAGAGTTGGAAAGCAATGTCGAGAAAGATGGCACAATCATCTCCGGCCAAACATTAGGAAGGAGTCATGGAACTTAGAGGAAGACATGATTCTGATAAAAGCCCACCAGGAATTTGGCAACAGGTGGTCAGAGATTGCTAAGAGGCTACCTGGAAGGACTGAAAATAGTATTAAGAATCATTGGAATGGAACAAAGAGACGGCAGAGTTGCAGGAGCTACAACGGGAATAAGAAAAACCCTTACGAAGGATCAATGCTCCGTGCTTACGTTAAAAGAGTCACTGCTACGGAAGAATCTACAAAAGTGTTAAAGAAACCCAGAAGCAAAAACAGTAAGAATGGGATAGCCACTTTGTTGAGGTTTGATCCATCTACAAACGATATGTTTTTTATCAGCAACTACGCGCCATTGCAAGTTAAAAGTAATAATGTTGGAAAGAATGCAATCACCAGGGGAATGAAATACTGA 1068 0.4195 MEFDPWSSSICPIIPYLNPHAQTMFPSQSSIFIPPSQPIMFNPNHVFHHFQDHNPPFLMDGSNSIVTPMYGIPTPSLGDGSFVNINSHQPVMLAPKNNSKIEEGKIIWDFSQKTMVHPFETSSPMSPSSPFCLSNEYGLGMSEFHSDTYRRMVEMEKNTNNATHNIIKGQWTPEEDSALVELVNEFGAKKWSEIAKLMCGRVGKQCRERWHNHLRPNIRKESWNLEEDMILIKAHQEFGNRWSEIAKRLPGRTENSIKNHWNGTKRRQSCRSYNGNKKNPYEGSMLRAYVKRVTATEESTKVLKKPRSKNSKNGIATLLRFDPSTNDMFFISNYAPLQVKSNNVGKNAITRGMKY* 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0994 355 ProSiteProfiles Myb-like domain profile. 163 214 IPR001005 -
Vra9g0994 355 Pfam Myb-like DNA-binding domain 171 228 - -
Vra9g0994 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 163 218 IPR017930 -
Vra9g0994 355 ProSiteProfiles Myb-like domain profile. 215 265 IPR001005 -
Vra9g0994 355 PANTHER MYB PROTEIN-RELATED 150 301 - -
Vra9g0994 355 SMART sant 219 267 IPR001005 -
Vra9g0994 355 SMART sant 167 216 IPR001005 -
Vra9g0994 355 CDD SANT 222 262 IPR001005 -
Vra9g0994 355 CDD SANT 171 214 IPR001005 -
Vra9g0994 355 PANTHER MYB DOMAIN PROTEIN 100-RELATED 150 301 - -
Vra9g0994 355 Gene3D - 167 219 - -
Vra9g0994 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 219 269 IPR017930 -
Vra9g0994 355 Gene3D - 222 264 - -
Vra9g0994 355 SUPERFAMILY Homeodomain-like 165 261 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0994 Vra-Chr9 12184336 12187238 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0994 157 293 MYB Transcription Factor Family AT4G18770 58.865 3.30e-51 174
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra9g0994 Myb_DNA-bind_6 1.1e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0994 K09422 - ccaj:109801641 357.451