Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0985 ATGGAACCAGAAGAAACCGCCGCCACCGCCGTAGACGGAAGTGGTGACGAGGGACTGCTGTTGTTAGAGGGCAGTGATGTCGGCGGTGGCAAGGACAGAGTGAAGGGCCCTTGGTCGCCGGAAGAGGACGCCATTCTCAGTCGTCTCGTGAGCAAGTTCGGCGCCAGAAACTGGAGCCTCATCGCACGGGGGATCAGTGGAAGATCCGGCAAGTCGTGCCGTCTCCGGTGGTGCAACCAGCTTGACCCCTCCGTTAAGCGCAAACCCTTCACCGATGAGGAGGACAGAATCATAGTTGCTGCTCATGCAATCCATGGCAACAAATGGGCAGCCATTGCCAGGCTTCTGCCCGGAAGAACAGATAATGCCATTAAGAACCACTGGAATTCCACTCTGAGGCGTCGCGGAGTTGAACTTGATAAGATTAAATTAGAATCTGGTAACTTCATGGAAGATGCCAGCTTGGAGAAAGCAAAAGCATCCTCGGAAGACACTCTATCATGTGGGGATGTTTCTTTGAAATCCTCAGAAGGGAGAGATGTCAGTTCTGTAGATATCATGGATGATAAATCTGATGGTAAAGCACAAGCTGAGGGCCAATTACACCACAAAGTCAAGGATCCACCAACCCTTTTTCGGCCAGTAGCTCGTGTAAGTGCTTTCAACGTTTATCACTCAAATGATGTTATACAGCCTTCAACATCAATTCAAAGACCTGTCCCGAAGCAAGGTCCCATTTTACAATCGTCAAGACCAGATATGGAATTTTGTAGAATGGTTGAAGGAATTTGTGGTGATCAGGCAATACCTCACCAGTGTGGCCATGGTTGCTGTGCTTCTCCAAATGGTAGAAAGTCCGAAAGCTCTTTGTTGGGACCGGAATTCATCGAATTCTCTGAACCCCCATCTTTCCCAAATTTTGAGTTGGCTGCAATTGCTGCAGACATCAGTAACCTTGCTTGGCTTAAAAGTGGATTGGAGAATAGTAGTGTGAAAATGATGGGAAACACGTCTGGCAGTGCAATGCCAAATGGATCTCGAATACATATTGGCCATTAG 1059 0.4835 MEPEETAATAVDGSGDEGLLLLEGSDVGGGKDRVKGPWSPEEDAILSRLVSKFGARNWSLIARGISGRSGKSCRLRWCNQLDPSVKRKPFTDEEDRIIVAAHAIHGNKWAAIARLLPGRTDNAIKNHWNSTLRRRGVELDKIKLESGNFMEDASLEKAKASSEDTLSCGDVSLKSSEGRDVSSVDIMDDKSDGKAQAEGQLHHKVKDPPTLFRPVARVSAFNVYHSNDVIQPSTSIQRPVPKQGPILQSSRPDMEFCRMVEGICGDQAIPHQCGHGCCASPNGRKSESSLLGPEFIEFSEPPSFPNFELAAIAADISNLAWLKSGLENSSVKMMGNTSGSAMPNGSRIHIGH* 353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0985 352 CDD SANT 89 132 IPR001005 -
Vra9g0985 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 86 136 IPR017930 -
Vra9g0985 352 Gene3D - 34 86 - -
Vra9g0985 352 Gene3D - 89 135 - -
Vra9g0985 352 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 30 85 IPR017930 -
Vra9g0985 352 SMART sant 34 83 IPR001005 -
Vra9g0985 352 SMART sant 86 134 IPR001005 -
Vra9g0985 352 Pfam Myb-like DNA-binding domain 38 95 - -
Vra9g0985 352 MobiDBLite consensus disorder prediction 167 186 - -
Vra9g0985 352 SUPERFAMILY Homeodomain-like 32 128 IPR009057 -
Vra9g0985 352 CDD SANT 37 79 IPR001005 -
Vra9g0985 352 ProSiteProfiles Myb-like domain profile. 30 81 IPR001005 -
Vra9g0985 352 PANTHER MYB PROTEIN-RELATED 7 329 - -
Vra9g0985 352 PANTHER - 7 329 - -
Vra9g0985 352 ProSiteProfiles Myb-like domain profile. 82 132 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0985 Vra-Chr9 12057274 12063054 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0985 24 352 MYB Transcription Factor Family AT3G09230 50.294 4.27e-108 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra9g0985 Myb_DNA-bind_6 3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0985 K09422 - gmx:100813406 609.372
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0985 9 12057274 12063054 Vra9g0985 9 12057274 12063054 ECH