Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0961 ATGAAGGAAAGGCAACGTTGGAAGGCCGAAGAGGATGCGTTGTTATGTGCTTACGTGAGAGAGTATGGTCCTAGGGAATGGAATCTTGTGTCTCATCGCATGAACACACCTCTCAACAGGGATGCAAAGTCATGCTTAGAAAGGTGGAAGAACTATCTCAAGCCTGGCATCAAAAAGGGGTCTCTAACCGAGGAAGAACAGCGCCTTGTAATCCGGCTTCAAGCGAAACACGGCAATAAATGGAAGAAAATTGCTGCAGAAGTTCCAGGTAGAACTGCCAAGAGGTTAGGGAAATGGTGGGAAGTGTTCAAAGAGAAGCAACAGAGGGAGAAACAAGAGATTAACCAAGCAATTGGCCCAGTTGACAATACCAAATATGATCATATTCTTGAGACTTTTGCTGAGAAGCTAGTGAAAGAACATCCTTCACAATCATCATACCTTATGGCTGCTTCTACTGGACCCTTTATCCACACTGATGCAACTGCTTCTGCATCTGCATCTGCATCTGCATCAGCGGCAGCATTCCTTCCTCTTTGGCTTTCAAATTCTAGCACCACCAGTCCCTCACTAGCAATCAGGCCACCTTCCCCTTCTGTTACCCTTAGTCTCTCCCCCTCAATAGCACCTCCTCCCCCTTGGTTGAATGTCACAACACCTCATGGTGATAACATAGTAGTGTTAGAGTTAATAGAGTGCTGTAAGGAGTTGGAAGAAGGACATCATGCTATGGTGGCGCATAGGAAGGAGGCGGCGTGGCTGTTGAGAAGGGTGGAGCAGCAGTTGGAGGAAGAGAAGGCAGGCAGAAGGAGGGAAAAGATGGAGGAAATTGAAGCAAAGATTAAGGCTCTAGGGGAAGAACAGAATGCTGCTTTGGACAGGATAGAAACAGAATATAAAGAACAGTTAGCAGGATTGAGGAGAGATGCAGAAAGCAAGGAGCAGAAGTTGGTTGAGGAATGGAATGCAAAGCACATGAGGGTAATGAAGTACATGGAACGACAACAAGTAGGAGGCAGAATACCCCGAATTGATGAGCCTAATGGAAGATAA 1053 0.4625 MKERQRWKAEEDALLCAYVREYGPREWNLVSHRMNTPLNRDAKSCLERWKNYLKPGIKKGSLTEEEQRLVIRLQAKHGNKWKKIAAEVPGRTAKRLGKWWEVFKEKQQREKQEINQAIGPVDNTKYDHILETFAEKLVKEHPSQSSYLMAASTGPFIHTDATASASASASASAAAFLPLWLSNSSTTSPSLAIRPPSPSVTLSLSPSIAPPPPWLNVTTPHGDNIVVLELIECCKELEEGHHAMVAHRKEAAWLLRRVEQQLEEEKAGRRREKMEEIEAKIKALGEEQNAALDRIETEYKEQLAGLRRDAESKEQKLVEEWNAKHMRVMKYMERQQVGGRIPRIDEPNGR* 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0961 350 Gene3D - 62 124 - -
Vra9g0961 350 PANTHER PROTEIN ROUGH SHEATH 2 HOMOLOG 1 349 - -
Vra9g0961 350 SMART sant 58 106 IPR001005 -
Vra9g0961 350 SMART sant 3 55 IPR001005 -
Vra9g0961 350 ProSiteProfiles Myb-like domain profile. 54 104 IPR001005 -
Vra9g0961 350 CDD SANT 6 53 IPR001005 -
Vra9g0961 350 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Vra9g0961 350 SUPERFAMILY Homeodomain-like 4 98 IPR009057 -
Vra9g0961 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 54 108 IPR017930 -
Vra9g0961 350 PANTHER TRANSCRIPTION FACTOR AS1 1 349 IPR031055 GO:0005634|GO:0006351|GO:0010338
Vra9g0961 350 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 53 IPR017930 -
Vra9g0961 350 Coils Coil 255 294 - -
Vra9g0961 350 CDD SANT 63 104 IPR001005 -
Vra9g0961 350 Pfam Myb-like DNA-binding domain 7 67 - -
Vra9g0961 350 Coils Coil 296 316 - -
Vra9g0961 350 Gene3D - 4 58 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0961 Vra-Chr9 11608589 11611502 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0961 1 343 MYB Transcription Factor Family AT2G37630 58.355 2.11e-139 398
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra9g0961 Myb_DNA-bind_6 5.3e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0961 K09422 - zju:107430642 455.677