LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0949	ATGGGCGACGGCGAAAGCACCTCCGATCGGTCGCTTAATTTCGAGGACATGACAGTGGTCTCCGCCGTGGGGCGCGGCGCCAAAGGCGTGGTGTTCCTGGCTCGTGCCGGTGGCCGGCGGTCGGGAGAGTGCGTGGCGCTTAAAGTGATGTCGAAGGCGCTGATTGCGCAGAAGAGGACGAGAAAGAAGGACGAGGAGGAGTACGGGAGAGTGTCGTTTGAAGAAGAAGTGCTCCGTCGTTTCAATCATCCGCTCTTGCCGAGGCTTAGAGGCGTTCTGGAAACGGAGAAAGTGATTGCGTTCGCCATCGATTACTGCCATGGTGGCACGCTCCACTCTCTCAGGAAGAAACAGACTGAAAAAATGTTCTCCGATGACACCATCAGGTTTTACGCTGTAGAATTGGTGCTTGCATTGGAATATTTACACGAATTGGGAATAGTGTACAGAGATTTGAAGCCAGAAAATGTGATGATTCAAGAAAACGGCCACATAATGCTCGTCGATTTTGATCTCTCCAAAAAGCTAAATCCTAAATCCCCTCACTCACTGAGTCAAAACTCGACCCCGAGTCCTAACTCGGAGAAACGTTCAAGGAAACAACAACGATTAACTCGTATATACAGTTTTTGCAACTCCGGCATATCGCCGTGGGACTCGGACTCGGAGCCCCCACTAAGTACAGTCGACTCAGTGCGTCGCACCGAGTCCGACTCGGTTGAGAAATCAAACTCGTTCGTTGGAACAGAAGAATACGTGGCACCCGAAATCTTATCAGGGAAAGGTCATGGTTTTAGCGTCGATTGGTGGTCATACGGCATCTTGTTGTACGAGATGCTGTATGGAACGACGCCGTTTAAAGGATTAAATAGGAAGGAAACGTTCTACCGGATCTTAACTAAAGAGCCAGAGTTAACGGGAGAGAAGACGGCGTTACGGGATTTAATTTCAAGATTGTTGGAAAAAGATGCTGACCGTCGGATCACATTGGAGGAGATCAAAGGCCACGATTTCTTCAAAGGGGTTAAGTGGGACAAAGTGTTGCAGATTGCAAGACCACCTTATATTCCCACAAATGAGGTTGAGAACAAAGTGGGGTTTAGCAAAAACGACGTGGAAGTGTTTGTGAACGAAGTGTTTTTTCCAACGAATGATGATGATGGCGTAGAGAATCGTGAGCATAACAAGAAGAATGACGATTTTTTAATTTTTTGA	1215	0.479	MGDGESTSDRSLNFEDMTVVSAVGRGAKGVVFLARAGGRRSGECVALKVMSKALIAQKRTRKKDEEEYGRVSFEEEVLRRFNHPLLPRLRGVLETEKVIAFAIDYCHGGTLHSLRKKQTEKMFSDDTIRFYAVELVLALEYLHELGIVYRDLKPENVMIQENGHIMLVDFDLSKKLNPKSPHSLSQNSTPSPNSEKRSRKQQRLTRIYSFCNSGISPWDSDSEPPLSTVDSVRRTESDSVEKSNSFVGTEEYVAPEILSGKGHGFSVDWWSYGILLYEMLYGTTPFKGLNRKETFYRILTKEPELTGEKTALRDLISRLLEKDADRRITLEEIKGHDFFKGVKWDKVLQIARPPYIPTNEVENKVGFSKNDVEVFVNEVFFPTNDDDGVENREHNKKNDDFLIF*	405

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g0949	404	PANTHER	FLIPPASE KINASE 1-RELATED	9	390	-	-
	Vra9g0949	404	Gene3D	Transferase(Phosphotransferase) domain 1	110	180	-	-
	Vra9g0949	404	PANTHER	SERINE/THREONINE-KINASE OXI1-LIKE PROTEIN	9	390	-	-
	Vra9g0949	404	MobiDBLite	consensus disorder prediction	178	201	-	-
	Vra9g0949	404	SUPERFAMILY	Protein kinase-like (PK-like)	18	362	IPR011009	-
	Vra9g0949	404	Gene3D	Transferase(Phosphotransferase) domain 1	239	358	-	-
	Vra9g0949	404	Pfam	Protein kinase domain	241	339	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra9g0949	404	Pfam	Protein kinase domain	19	181	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra9g0949	404	ProSiteProfiles	AGC-kinase C-terminal domain profile.	340	404	IPR000961	GO:0004674\|GO:0005524\|GO:0006468
	Vra9g0949	404	Gene3D	Phosphorylase Kinase; domain 1	16	109	-	-
	Vra9g0949	404	MobiDBLite	consensus disorder prediction	178	195	-	-
	Vra9g0949	404	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	147	159	IPR008271	GO:0004672\|GO:0006468
	Vra9g0949	404	ProSiteProfiles	Protein kinase domain profile.	17	339	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Vra9g0949	404	SMART	serkin_6	17	339	IPR000719	GO:0004672\|GO:0005524\|GO:0006468

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0949	Vra-Chr9	11352849	11355364	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0949	1	380	AGC Kinase Gene Family	AT3G25250	58.073	3.24e-150	430

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	AGC_RSK-2	Vra9g0949		Pkinase	5.1e-33	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0949	K20714		-	gmx:100785773	619.002