Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Vra9g0948 | ATGGGACCAAACGCTGCGGCGGCAAAACAAGCTGAGCAACTCCGAATTAACGGCAATACTTACTTCAAGAAAGACCGTTTTGGGGCTGCCATCGACGCTTACACCGAGGCGATTACGCTGTGCCCTAATGTTCCGATTTATTGGACGAATCGGGCGCTGTGCCATCTCAAGCGCAATGACTGGGAGAGAGTAGAGGAAGATTCTCGGAAGGCAATTCAGCTGGACAGCAATTCAGTCAAGGCCCACTATATGTTGGGGCTAGCATTACTACGGAGACAAGAATCTGCCAAGGGAATTAAAGAATTAGAGAAGGCTTTGGATCTCGGGAGAGGTGCCAATCCCAAGGGCTATATGGTAGAAGAAATATGGCAAGAGCTTGCAAAGGNAAAATACCATGAGTGGGAGCGATCATCTTCGAAACGATCATGGAAATTGCAGAGCCTGAAAGAAGCTTGCGAGTCTGCTCTGAAGGAAAAACATTTTCTGGAATTCTCCGAAGCAGAAGGGTTTGTAGATGATCCTACTACTTCCCATTCGGAACAATTAGAGGCTTTAGAAGTAGTCTTCAAAATAGCNGCAGAAGCCGATACACCTACTGAGGTGCCAGATTACTTATGTTGCAGAATCACACTCGACATTTTTCATGATCCTGTAATCACTCCAAGTGGGCTTACATATGAGAGAGCAGTGATTCTTGANCACCTTCAGAAGGTGGGTAAATTCGACCCAATCACGCGGGAACCACTTGATCAATCACAGTTAGTGCCAAACTTGGCCATTAAGGAAGCGGTTCAGGCATTCTTGGACAAGCATGGTTGGGCTTACAAGGTAGACTAA | 837 | 0.4636 | MGPNAAAAKQAEQLRINGNTYFKKDRFGAAIDAYTEAITLCPNVPIYWTNRALCHLKRNDWERVEEDSRKAIQLDSNSVKAHYMLGLALLRRQESAKGIKELEKALDLGRGANPKGYMVEEIWQELAKXKYHEWERSSSKRSWKLQSLKEACESALKEKHFLEFSEAEGFVDDPTTSHSEQLEALEVVFKIAAEADTPTEVPDYLCCRITLDIFHDPVITPSGLTYERAVILXHLQKVGKFDPITREPLDQSQLVPNLAIKEAVQAFLDKHGWAYKVD* | 279 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Vra9g0948 | 278 | Gene3D | Tetratricopeptide repeat domain | 4 | 141 | IPR011990 | GO:0005515 | |
| Vra9g0948 | 278 | SMART | tpr_5 | 45 | 78 | IPR019734 | GO:0005515 | |
| Vra9g0948 | 278 | SMART | tpr_5 | 11 | 44 | IPR019734 | GO:0005515 | |
| Vra9g0948 | 278 | SMART | tpr_5 | 79 | 112 | IPR019734 | GO:0005515 | |
| Vra9g0948 | 278 | Pfam | U-box domain | 201 | 273 | IPR003613 | GO:0004842|GO:0016567 | |
| Vra9g0948 | 278 | PANTHER | E3 UBIQUITIN-PROTEIN LIGASE CHIP | 5 | 277 | IPR045200 | GO:0000209|GO:0061630 | |
| Vra9g0948 | 278 | Pfam | Tetratricopeptide repeat | 18 | 43 | IPR019734 | GO:0005515 | |
| Vra9g0948 | 278 | SMART | Ubox_2 | 204 | 267 | IPR003613 | GO:0004842|GO:0016567 | |
| Vra9g0948 | 278 | SUPERFAMILY | TPR-like | 10 | 111 | IPR011990 | GO:0005515 | |
| Vra9g0948 | 278 | ProSiteProfiles | U-box domain profile. | 200 | 274 | IPR003613 | GO:0004842|GO:0016567 | |
| Vra9g0948 | 278 | Gene3D | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 277 | IPR013083 | - | |
| Vra9g0948 | 278 | SUPERFAMILY | RING/U-box | 194 | 275 | - | - | |
| Vra9g0948 | 278 | CDD | RING-Ubox_CHIP | 201 | 267 | IPR045202 | - | |
| Vra9g0948 | 278 | ProSiteProfiles | TPR repeat profile. | 11 | 44 | IPR019734 | GO:0005515 | |
| Vra9g0948 | 278 | PANTHER | OS08G0113300 PROTEIN | 5 | 277 | - | - |
Duplication type information
| Select | Gene | Chromosome | Start | End | Duplicated_type |
|---|---|---|---|---|---|
| Vra9g0948 | Vra-Chr9 | 11327056 | 11333891 | Wgd |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Vra9g0948 | 4 | 277 | U-box Gene Family | AT3G07370 | 67.883 | 1.42e-139 | 392 |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Vra9g0948 | K09561 | - | gmx:100796519 | 521.161 |