Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0947 ATGAAGTTGGAAGAGCACATGAGAGCAATAGGACACACTAAGATTACAATAATCGTTTTCTCCAAATCATACACTGAATCTGCTTGCTCTCTTCTTGAGCTTGAAAAAATCATTGAATGCTACGAAACATTTGGCCAAATAGTTGTGCCCGTATTTTACGAGATTGACCCTTTAGATGTACGTCATCAGAAGGATGATTTTGGGAAAACATTGGAAGACACTGCACACAGAAGCTATGCAGGAAAACAACTGCAACATGCGCGGTCCAGGTGGAGCAGTGCACTCAATAGAGTTGCAGGTATGACTGGTTGGGATGTCAGATATTTCAGGCATGATGCTCAACTTGTGGAGGTAATTGTTAGGCGCGTTAAGGAATTACTGGACTACAAAGACATGTTTATTACCCAATATCCTGTTGCATTATTAGAGTCCCGCGTGGAAGACGTGATTAAATATATTGAGAATCAACCCTCCAAAGTGTGTATCATAGGAATATGGGGATTCAGAGGATCAGGGTATGTTGCTTTGCAAGAAAATCTTCTTTCTGATGTCCTAAAATCAAAGTTGATGGTGGGAGGCGTTGGGATCGGAAGAATTTATATCCAGAATGAATTTTGTAGAAGGAAGTTGTTGATTGTGCTTGATGATGTAAATGAGTTTGGCCAATTGGAAAACCTATGCGGGTCTCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGATCTTCACTTACTGAAACAACTCGAAAATAATTATGTTTATCAAAATGAATCACTTGAAGCAAAACCAAGAAAAAAATTGAAGGAACTTGATAGAGACATAGTTAATTATTGTGAAGGATTACCACTGGCTCTTCAGTTCCTTGGTTCCTATTTATGTGATAAAACAATAGAAGGGTGGAGAAGTCTATTGAGGAAATTACAAAGAATACACGGGGATAATCTTCTGAAGGTATTAAAAATAAGTTTTGACGGTTTACGTGATACTGAAAAGGATATACTTCTTGATCTATGTTGTTTCTTTAAAGGCAAAGAAAAAGACTATGTAACCGATATATTAAATGGCTGTGGACTACGTGCTGATATTGGAATAACAGTTCTCATACAGCGTGGCCTCATAAAAGTTGACAGAAATAACAAACTTCAAATGCATCCTTTGTTACAATACATGGGAAGAGAAATTATTCGTCAAGTATGCCCAGAGGAACCGGGGAAAAGGAGTCGATTGTGGTTGCAGGATGACGTTAAAGATGTACTGATACAGAAAACTGGGACAGAAGCTATCCAGGGATTGTCCCTGAAACTGCATTCAACAAGCAGAGATTGCTTCAAAACTCATGCTTTCAAGGAAATGAAGAAATTAAGACTTCTACGACTAGATCATGTACAACTTGTCGGAGATTATGGGCACATTTCTAAAGAACTGAGATGGATTTGCTGGAAAGGATTCCCTTCTAAATACATTCCAAAAAACTTGTACATGGGAAATGTAATTGCAATTGATTTAAGGCATAGTCATCTTCAATACGTCTGGAAACCACCCCAGATTTTAGAGCAGTTACAATTCCTTAATCTTAGTCACTCCAAATACTTGAAAGAAACACCTGACTTTTCCAGACTACCAAGTCTTGAACAGCTCATTCTAAAAGATTGTCCAAGTTTGCTCAAGGTACACCCATCCATTGCTGATCTCTCCAACATACGAGTGATAAATTTGAAGGATTGCAAAAGTCTACGCTATCTTCCAAGAGAGGTATATAAGTTGAAATCTTTAAAAACTCTCATCCTATCTGGTTGTTCGAAGGTTGGCCCTATAGATATATCACAGGTGAAATCCTTGGTAAATATAATTTGCTTAAAACAAAACTGTGAAACAAACATCGATGAATTGTAA 1905 0.3774 MKLEEHMRAIGHTKITIIVFSKSYTESACSLLELEKIIECYETFGQIVVPVFYEIDPLDVRHQKDDFGKTLEDTAHRSYAGKQLQHARSRWSSALNRVAGMTGWDVRYFRHDAQLVEVIVRRVKELLDYKDMFITQYPVALLESRVEDVIKYIENQPSKVCIIGIWGFRGSGYVALQENLLSDVLKSKLMVGGVGIGRIYIQNEFCRRKLLIVLDDVNEFGQLENLCGSREWFGQGTVIIITTRDLHLLKQLENNYVYQNESLEAKPRKKLKELDRDIVNYCEGLPLALQFLGSYLCDKTIEGWRSLLRKLQRIHGDNLLKVLKISFDGLRDTEKDILLDLCCFFKGKEKDYVTDILNGCGLRADIGITVLIQRGLIKVDRNNKLQMHPLLQYMGREIIRQVCPEEPGKRSRLWLQDDVKDVLIQKTGTEAIQGLSLKLHSTSRDCFKTHAFKEMKKLRLLRLDHVQLVGDYGHISKELRWICWKGFPSKYIPKNLYMGNVIAIDLRHSHLQYVWKPPQILEQLQFLNLSHSKYLKETPDFSRLPSLEQLILKDCPSLLKVHPSIADLSNIRVINLKDCKSLRYLPREVYKLKSLKTLILSGCSKVGPIDISQVKSLVNIICLKQNCETNIDEL* 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0947 634 ProSiteProfiles TIR domain profile. 1 127 IPR000157 GO:0007165
Vra9g0947 634 Gene3D Ribonuclease Inhibitor 425 632 IPR032675 -
Vra9g0947 634 Gene3D - 3 133 IPR035897 -
Vra9g0947 634 Gene3D - 257 335 IPR042197 -
Vra9g0947 634 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 93 IPR035897 -
Vra9g0947 634 Gene3D - 174 256 IPR027417 -
Vra9g0947 634 Pfam NB-ARC domain 201 313 IPR002182 GO:0043531
Vra9g0947 634 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 175 623 - -
Vra9g0947 634 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 172 - -
Vra9g0947 634 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 172 IPR044974 GO:0006952
Vra9g0947 634 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 175 623 IPR044974 GO:0006952
Vra9g0947 634 Pfam TIR domain 8 124 IPR000157 GO:0007165
Vra9g0947 634 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 125 341 IPR027417 -
Vra9g0947 634 SUPERFAMILY L domain-like 399 623 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0947 Vra-Chr9 11323141 11325738 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0947 9 607 WRKY Transcription Factor Family AT4G12020 28.271 2.25e-65 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0947 - - vra:106774113 970.689