Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0946 ATGGAGTTTGCATCTTCATCCTTCTTAACATCAGAACCCCATTTCATACACGATGTGTTCATCAACTTTGGGGGAGAAGACATCGGTAGAAGGTTTGTTTCTCATCTCCATTATGCCCTTTTACAAGCTCAAGTCAAAACTTTTATTAGCCAGGAGAATCTGCATGATGAGGGAATGAAGCTGGAAGAGCACATGAGAGCAATAGGACACACTAAGATTTCAATAATCGTTTTCTCCAAATCATATACTGAATCTGTTTGCTGTTTTCTTGAGCTTGAAAAAATAATTGAATGCCACGAGACATTTGGCCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCATCGGTTGTACGTCATCAGAAGAATGATTTTGTAAAAGCGTTGGAAGAAATTACACACAATAGCTATTTAGGAAAACAACTGCAACATGCGTTGTCCAAGTCGAGCCTTCCACTCACCACAGCTGCAGGCATCGCTGTTTGGGATGTCAGAATATTCAGGCATGATGCTGCACTTGTAGAGCGAATTGTTAGCCACGTTAAAACATTACTGGACTATAAAGACTTGTCTATTACCGAATTTCTTGTTGGATTGGAATCCCGCGTGGAAGACGTGATTAAATTGATTGAAAATCAATCTACCAATGTGTGTGTGATAGGGATATGGGGAATGGAAGGGTCGGGTAAAACAACCATAGCCAAAGCAACCTACAATCGAATTTATCGTGAATTTATTGGTAAGAGTTTTATTGAGAATACTCATTATGAAGAGTATCTTGATTTGGAAGCAAAACTTATTTCTGATGTCCTAAAATCAGAGTTGGAGGGGCAAAGCGGTGGGATGGGAACAACTATGATCCAGAATAGACTTTATCGAAAAAAGTTGTTCATTGTGCTTGATGACGTGAATCACATTGGCCAATTAGAAAACCTATGCGTGAGTAGAGAAAGGTTCGGTCAAGGAACTGTGATAATCATTACTACTAGAGATTTTCAGTTGCTGAACCAACTCAGAGTTAATTATGTATATGAAATGGATCTTTTGAACGGAAATGAGTCACTTGAGCTTTTTAGTTGGCATGCCTTTGGAGAAGCAATACCAAAAAAAGAATGGAGTGAACTCGCAAGAAGCGTTGTTGTTTATTGTAGAGGACTACCACTAGCTCTTCAGTTCCTTGGTTCCTATTTATTTGATAGTACAATACAAGTGTGGAAAAGTGTGTTGAGTATATTACAAAGAATACCCCCGGATAATCTTCTGAACGTATTAAAAATATGTTTTGACGATTCACATAATACTGAAAAGGATATACTTCTTGATGTATGTTGTTTCTTTAAAGGCAAAGAAAAAGACTATGTAACGGAGATATTAAATGGCTGTGGACTATATGCTGATTTTGGAGTAACAGCTCTCATAGAGCGTGGCCTCATAAAAGTTGAAAGGAACAACAAACTTGAAATACACCCTTTATTACAAGACATGGGAAGAGAAATTATTCGTCAAGTATGCCCAGAGGAACCGGGGAAACGGAGTCGATTGTGGTTGCAGGATGACGTAAAAGATGTATTGAAAGAGAATACTGGGACAGAAGCTATCCAGGGATTGTCCCTGNAACTGCATTCAACAAGCAGAGATTGCTTCAAAACTCATGCTTTCAAGGAAATGAAGAAATTAAGACTTCTACGACTAGATAATGTACATCTTGTTGGAGATTATGGGCACATTTCTAAAGAACTGAGNTGGATTTGCTGGAAAGGATTCCCTTCTAAATACATTCCNAANAACTTTTATATGGGAAATGTAATTGCAATTGATTTAAGGCATAGTCATCTTCAACGCGTCTGGAAACAACCACTCTGGAAACAATCCCAGGTTTTAGAGCGGTTAAAATTCCTTAATCTTAGTCACTCCAAATACTTGAAAGAAACGCCAGACTTTTCCAGACTACCAAGTCTTGAACAGCTAATTCTAAAAGATTGTCCAAGTTTGCTCAAGCTACACCCATCCATTGGTGATCTCTCTAATATACTATTGATAAATTTGAAGGATTGCACAAGTCTAAGCTATCTCCCAAGAGAGATATCTAAGTTGAGATCTTTAAAAACTCTAATCCTATCTGGTTGTTCGAAGCTTGGCCCTATAGATATAGCACAGGTGAAATCCTTGGTAACTATAATTGCTTAA 2187 0.38 MEFASSSFLTSEPHFIHDVFINFGGEDIGRRFVSHLHYALLQAQVKTFISQENLHDEGMKLEEHMRAIGHTKISIIVFSKSYTESVCCFLELEKIIECHETFGQIVLPVFYEIDPSVVRHQKNDFVKALEEITHNSYLGKQLQHALSKSSLPLTTAAGIAVWDVRIFRHDAALVERIVSHVKTLLDYKDLSITEFLVGLESRVEDVIKLIENQSTNVCVIGIWGMEGSGKTTIAKATYNRIYREFIGKSFIENTHYEEYLDLEAKLISDVLKSELEGQSGGMGTTMIQNRLYRKKLFIVLDDVNHIGQLENLCVSRERFGQGTVIIITTRDFQLLNQLRVNYVYEMDLLNGNESLELFSWHAFGEAIPKKEWSELARSVVVYCRGLPLALQFLGSYLFDSTIQVWKSVLSILQRIPPDNLLNVLKICFDDSHNTEKDILLDVCCFFKGKEKDYVTEILNGCGLYADFGVTALIERGLIKVERNNKLEIHPLLQDMGREIIRQVCPEEPGKRSRLWLQDDVKDVLKENTGTEAIQGLSLXLHSTSRDCFKTHAFKEMKKLRLLRLDNVHLVGDYGHISKELXWICWKGFPSKYIPXNFYMGNVIAIDLRHSHLQRVWKQPLWKQSQVLERLKFLNLSHSKYLKETPDFSRLPSLEQLILKDCPSLLKLHPSIGDLSNILLINLKDCTSLSYLPREISKLRSLKTLILSGCSKLGPIDIAQVKSLVTIIA* 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0946 728 PRINTS Disease resistance protein signature 219 234 - -
Vra9g0946 728 PRINTS Disease resistance protein signature 290 304 - -
Vra9g0946 728 PRINTS Disease resistance protein signature 383 397 - -
Vra9g0946 728 PRINTS Disease resistance protein signature 696 712 - -
Vra9g0946 728 CDD AAA 197 335 - -
Vra9g0946 728 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 441 IPR027417 -
Vra9g0946 728 Gene3D - 348 431 IPR042197 -
Vra9g0946 728 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 145 IPR035897 -
Vra9g0946 728 Gene3D Ribonuclease Inhibitor 530 726 IPR032675 -
Vra9g0946 728 Gene3D - 185 343 IPR027417 -
Vra9g0946 728 Pfam NB-ARC domain 201 414 IPR002182 GO:0043531
Vra9g0946 728 Gene3D - 10 184 IPR035897 -
Vra9g0946 728 ProSiteProfiles TIR domain profile. 15 185 IPR000157 GO:0007165
Vra9g0946 728 Pfam TIR domain 17 181 IPR000157 GO:0007165
Vra9g0946 728 SUPERFAMILY L domain-like 500 724 - -
Vra9g0946 728 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 718 - -
Vra9g0946 728 SMART till_3 16 152 IPR000157 GO:0007165
Vra9g0946 728 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 718 IPR044974 GO:0006952
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0946 Vra-Chr9 11285906 11288778 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0946 17 713 WRKY Transcription Factor Family AT4G12020 28.392 2.14e-70 249
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0946 - - vun:114165946 1014.6