Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0943 ATGAAGCAGGAAGAGCACATGAGAGCAATAGGACACACTAAGATTACAATAATCGTTTTCTCCAAATCATACACTGAATCTGCTTGCTCTCTTCTTGAGCTTGAAAAAATCATTGAATGCCACGAAACATTTGGCCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCATTGGATGTATGTCATCAGAAAGATGATTTTGGAAAAGCGTTGGAAGACACTGCACACAGAAGCTATGCAGGAGAACAACTGCAACATGCGCGGTCAAGGTGGAGCAGTGCACTCAAAAGAGTTGCAGGTATGACTGGTTGGGATCACAGAGATTTCAGGCATGATGCTGAACTTGTAGAGCAAATTGTTAGCCGCGTTAAGCCAATAGACTTGTTTATTACCGAATATCCAGTTGGACTAGAGTCCCGCGTGGAAGAAGTGATTAAATGTATTGAAAATCAATCCACGAAAGTGTGTATGATAGGAATATGGGGAATGGGAGGATCAGGTAAAACAACCATAGCAAAAGCCATCTGCAATCGAATTTATCGTAAATTCCTTGCTAATAGTTTTATTCAGAACATTAAAGAAGCTTGGGATCCAGAATATGAAGAAAATGTTCGTTTGCAAGAATATCTCCTTTCTGATGTCCTAAAATCCAAGTTTAAGATTCAAAGCGTTCGCATTGGAAGAACTATGATACAGAATGAACTTTCTCGAAGAAAGTTGCTCATTGTGCTTGATGATGTGAATGAGTTTGGCCAATTAGAAATCCTTTGCGGGTGTCGTGAATGGTTCGGTCAAGGAACTGTCATAATCATCACAACAAGAGATGTTCGCCTGCTGAACCAACTCAAAGTTAATTATGTTCATAAAATGGATTTTTTGGACGAAAATAAGTCACTTGAGCTTTTCAGTTGGCATGCCTTTAGAGATGCAAAACCAAGAAAAGAATTTAAGGAACTTGCAAGAGACACAGTTGATTATTGTGGAGGACTACCACTAGCTCTTGAGGTCCTTGGTTCCTATTTATGTTATAAAACAATAGAAGTGTGGAAAAGTGTATTGTTGAAACTACAAAGAATTCCGCCGGATGACCTTGTGAGGGCATTAAAAATAAGTTTTGAAGATTTACGTGATACGGAAAAGGACATATTTCTGGATGTATGTTGTTTCTTTATTGGCAAAGACAGAGACTATGTGACAGAGATATTAAATGACTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAGCGTGGCCTCATAAAAGTTGAAAGCAACAACAAACTTGAAATGCACATTTTGTTACAAGAAATGGGAAGAGAAATTATTCGTCAAGTATACCCAGAGGAACCGGGGAAAAGGAGTCGGTTGTGGTTGCAGGATGACGTAAAAGATGTACTGAAAGAGAATACTGGGACAGAAGCTATCCAGGGATTGTCCCTGGAACTGCATTCAACAAGCAGAGATTGCTTCAAAACTCATGCTTTCAAGGAAATGAAGAAATTAAGACTTCTACGACTAGATCATGTACAAGTTGTTGGAGATTATGGGCACATTTCTAAAGAACTGAGGTGGATTTGCTGGAAAGGATTCCCTTCTAAATACATTCCAAACAACTTTTATATGGGAAATGTAATTGCAATTGATTTAAGGCATAGTCATCTTCAACTCGTCTGGAAACAACCCCAGTTAAAAAAATGA 1704 0.3862 MKQEEHMRAIGHTKITIIVFSKSYTESACSLLELEKIIECHETFGQIVLPVFYEIDPLDVCHQKDDFGKALEDTAHRSYAGEQLQHARSRWSSALKRVAGMTGWDHRDFRHDAELVEQIVSRVKPIDLFITEYPVGLESRVEEVIKCIENQSTKVCMIGIWGMGGSGKTTIAKAICNRIYRKFLANSFIQNIKEAWDPEYEENVRLQEYLLSDVLKSKFKIQSVRIGRTMIQNELSRRKLLIVLDDVNEFGQLEILCGCREWFGQGTVIIITTRDVRLLNQLKVNYVHKMDFLDENKSLELFSWHAFRDAKPRKEFKELARDTVDYCGGLPLALEVLGSYLCYKTIEVWKSVLLKLQRIPPDDLVRALKISFEDLRDTEKDIFLDVCCFFIGKDRDYVTEILNDCGLHADIGITVLIERGLIKVESNNKLEMHILLQEMGREIIRQVYPEEPGKRSRLWLQDDVKDVLKENTGTEAIQGLSLELHSTSRDCFKTHAFKEMKKLRLLRLDHVQVVGDYGHISKELRWICWKGFPSKYIPNNFYMGNVIAIDLRHSHLQLVWKQPQLKK* 568
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0943 567 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 104 IPR035897 -
Vra9g0943 567 Gene3D - 128 288 IPR027417 -
Vra9g0943 567 ProSiteProfiles TIR domain profile. 1 127 IPR000157 GO:0007165
Vra9g0943 567 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 128 385 IPR027417 -
Vra9g0943 567 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 12 556 - -
Vra9g0943 567 Pfam NB-ARC domain 138 358 IPR002182 GO:0043531
Vra9g0943 567 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 12 556 IPR044974 GO:0006952
Vra9g0943 567 SUPERFAMILY "Winged helix" DNA-binding domain 364 469 IPR036390 -
Vra9g0943 567 Gene3D - 292 376 IPR042197 -
Vra9g0943 567 Pfam TIR domain 8 123 IPR000157 GO:0007165
Vra9g0943 567 Gene3D - 2 127 IPR035897 -
Vra9g0943 567 PRINTS Disease resistance protein signature 157 172 - -
Vra9g0943 567 PRINTS Disease resistance protein signature 234 248 - -
Vra9g0943 567 PRINTS Disease resistance protein signature 327 341 - -
Vra9g0943 567 PRINTS Disease resistance protein signature 498 514 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0943 Vra-Chr9 11258810 11264290 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0943 9 561 WRKY Transcription Factor Family AT4G12020 28.723 2.87e-67 235
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0943 - - vra:106774113 1148.65