Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0942 ATGGAGTTCGCATCTTCTTCTTCATCATCATCTTCATCCTTCTTAAAATCAGAACCCCATTTCTTATACGATGTGTTCATCAGCTTTGGGGAAGAAGAAATCGGTAGAAAGTTCGTTTCTCATCTCCATTCTGCCCTTTTACAAGCTCAAGTCAAAACTTTTATAGATGTGGAGAATCTGTCGAAGGAAATGAAGTTGGAAGAACATATGCGAGCAATTGAACGTACTAAGATTACAATAATTATTTTCTCCAAGAGATACACTGAATCTGCCTGTTGTCTTCTTGAGCTTGAAAAAGTCATTGAATGCCACCAAAGTTTTGGTCAAATAGTTCTGCCTGTATTTTACGAGATTGAAGCATTCGACGTACGTCACCATAAGAATGATTTTGGAAAAGCTATGGAAGAAACTGCACACAAAAGCTATTCTGGAGAACTAGTGGAACATGCGTTGTCCAGGTGGAGTCGTGCACTCTTCACAGCTGCAGGTATCATTGGTTGGGATGTCACAGATTTTTGGCATGATGCTCAACTTGTGAAGAAAATTGTTGGCCGTGTTCAGACATTACTGGACTACAAAGACTTGTTTATTACCCAATATCCTGTTGCATTATTAGAGTCCCGCGTGGAAGACGTGATTAAATATATTGAAAATCAACCCTCCAAAGTGTGTATCATAGGAATATGGGGAATGAGAGGATCAGGTAAAAAAACCATAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTATTGAGAATATTACAGAATTTGGGGTTCCAGACAATAAAAGCTATGTTGGTTTGCAAAGACATCTTCATTTTGATGTCCTAAAATCTTGGTTTGATGTGGACAGCATTGGGATAGGAAGAACTATGATCGAGAAGGAACTTTCTCAAAAAAAGTTGCTCATTGTGCTTGACGATGTGAATGATTTTGTCCAATTTGAAATCGTATGCGGGAATTGTGAATGGTTGGGTCAAGGAAGTGTGATAGTCATTACAACTAGAGATGTTCACGTGCTAAACGGAATCAAAGTTAATTATGTTTATAAAATGGATGGCATGAACGAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCTTTTGGTGAAGGAAAACCAAGAAAAGACTTGGATGATCTTGCAAGAAACATAGCTGCTTACTGTCGAGGACTACCACTAGCTCTTGAGCTCCTTGGTTCCTTTTTATATGATAAGACAATGAACGAGCGGGAAAGTGTATGGTCGAAACTAAATAGAACTCCAATGTATGATATTGAAAGCATATTAGAAATATGTTTTGAGTTAGAAGCTATGGAAAAGGATATATTTCTTGAAGTATGTCGTTTCTATATTGGTAAAGAAAGAGGGTATGTGACAGATATATTAAATGCCCTGGGACTACATGCAAATATTGGAATAACAGTTCTCATAGAACGTGGTCTTATAAAAGTTGACAGTGATAACAAACTTGAAATGGATCCTTTGTTACAACACATTGGAAAAGAAATTAGTCGTGAAAGATCAAGCAGGGGAATCGGGTCGATTATGGATTCTGAATGA 1581 0.3744 MEFASSSSSSSSSFLKSEPHFLYDVFISFGEEEIGRKFVSHLHSALLQAQVKTFIDVENLSKEMKLEEHMRAIERTKITIIIFSKRYTESACCLLELEKVIECHQSFGQIVLPVFYEIEAFDVRHHKNDFGKAMEETAHKSYSGELVEHALSRWSRALFTAAGIIGWDVTDFWHDAQLVKKIVGRVQTLLDYKDLFITQYPVALLESRVEDVIKYIENQPSKVCIIGIWGMRGSGKKTIAKAIYNRIYREFIGKSFIENITEFGVPDNKSYVGLQRHLHFDVLKSWFDVDSIGIGRTMIEKELSQKKLLIVLDDVNDFVQFEIVCGNCEWLGQGSVIVITTRDVHVLNGIKVNYVYKMDGMNENDSLELLSWHAFGEGKPRKDLDDLARNIAAYCRGLPLALELLGSFLYDKTMNERESVWSKLNRTPMYDIESILEICFELEAMEKDIFLEVCRFYIGKERGYVTDILNALGLHANIGITVLIERGLIKVDSDNKLEMDPLLQHIGKEISRERSSRGIGSIMDSE* 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0942 526 ProSiteProfiles TIR domain profile. 21 190 IPR000157 GO:0007165
Vra9g0942 526 Gene3D - 195 355 IPR027417 -
Vra9g0942 526 Coils Coil 522 526 - -
Vra9g0942 526 SUPERFAMILY "Winged helix" DNA-binding domain 432 515 IPR036390 -
Vra9g0942 526 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 167 IPR035897 -
Vra9g0942 526 Pfam TIR domain 23 186 IPR000157 GO:0007165
Vra9g0942 526 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 441 IPR027417 -
Vra9g0942 526 Pfam NB-ARC domain 206 434 IPR002182 GO:0043531
Vra9g0942 526 PRINTS Disease resistance protein signature 225 240 - -
Vra9g0942 526 PRINTS Disease resistance protein signature 302 316 - -
Vra9g0942 526 PRINTS Disease resistance protein signature 395 409 - -
Vra9g0942 526 Gene3D - 360 442 IPR042197 -
Vra9g0942 526 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 514 - -
Vra9g0942 526 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 514 IPR044974 GO:0006952
Vra9g0942 526 Gene3D - 16 192 IPR035897 -
Vra9g0942 526 SMART till_3 22 164 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0942 Vra-Chr9 11252022 11253839 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0942 207 510 WRKY Transcription Factor Family AT5G45050 31.046 1.52e-40 155
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0942 - - vun:114165946 656.751