Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0939 ATGGAGTTTGCATCTTCTTCTTCTTTATCATCATCATCTTCATCCTTCTTAACATCAGAACCCCATTTCATACACGATGTGTTCATCAACTTTGGTGGAGAAGACATCGGTAGAAGGTTTGTTTCTCATCTCCATTCTGTCCTTTTACAATCTCAAGTCAAAACTTTTATTAGCCAGGAGAATCTGCATGATGAGGGAATGAAGTTGGAAGAGCACATGAGAGCAATAGGACACACTAAGATTACAATAATCGTTTTCTCCAAATCATACACTGAATCTGCTTGCTCTCTTCTTGAGCTTGAAAAAATCATTGAATGCCACGAAACATTTGGCCAAATAGTTCTGCCCGTATTTCACGAGATTGACCCATTGGATGTACGTCATCAGAAGGATGATTTTGGAAAAGCTTTGGAAGACACTGCACACAGAAGCTATTCAGGAGAACAACTGCAACATGCGCGGTCAAGGTGGAGCAGTGCACTCAATAGAGTTGCAGGTATGACTGGTTGGGATGTCAGACATTTCGGGCATGATGCTGCACTTGTAGACGTAATTGTTAACCGCGTCAAGACATTACTGGACTATAGAGACTTGTTTATTACCAGCTATCCTGTTGGATTAGAGTCCCGCGTGGAAGACGTGATTAAATGTATTGAAAATCAATCCACCAAAGTGTGTATGATAGGAATATGGGGAATGGGAGGATCAGGTAAAACAACCCTAGCCAAAGCCATCTACAATCGAATTTATCGTAAATTCATTGGTAAGAGTTTTATTGAGAATATTAGAAAAGTTTGGGATCTAAAATATGAAAAATATGTTCTTTTGCAAGAATATCTCCTTTCTGATGTCCTAGAATCCAAGTTGAAGGTGAAAAGCGTTGGGATGGGAAGAACTATGATCCAGAATGAATTTTCTCGAAAAAAGTTGCTCATTGTGCTTGATGATGTGAATGAGTTTGGCCAATTAGAAAACCTATGCGGGAGGCGTGAATGGTTCGGTCAAGGAACTGTGATAATAATTACAACTAGAGATTTTCACTTGCTGAACCAACTCAAAGTTAATTATGTATATGAAATGGATCTTTTGAACGAAAATGAGTCACTTGAGCTTTTTAGTTCGCTTGCCTTCGGAGATGCAAAAGCAAAAGAAGACTTCAGTGAGCTTTCAAGAAACGTTGTTGCTTATTGTGGAGGACTACCTCTGGCTCTTGAAGTGCTTGGTGCTTATTTATTTGACCAGACGTCAAAGAGAGTGTGGGAAGGAGTATTGTCGATACTAGAAAAAATTCCCAATAAGGAGGTTCAGCGGAAATTAAGAATAAGCTTTGATAGTTTAAGCAATGACATGGAGAAGGATATATTACTTGATGTATGTTGTTTCTTTATAGGTAAAGACAGAGGTTATGTCACAGAAATACTAAATGGTTGTGAACTATGTGCTGATGTTGGAATACCGGTTCTCATAGAACGTAGCCTCATAAAAGTAGAAAAAAACAACAAACTTGGAATGCATCCTTTACTACAAGAAATGGGAAGAGAGATCATTCGTGAAAACTCAAGAAAGGACCCCGGGAAGCACAGTCGACTGTGGTCTCAAAAGGAAGTAGTTGAAGTATTGACAAAGAATACTGGGACTGAAGCTATTGAGGGATTGGTTTTGAAAATGGATTTAACCAGCAGAGATTGCTTCAAAACCGACTCTTTCAAGAAAATGGAGAGATTGAGACTCTTGCAACTCCATCATGTACAACTTGATGGAAATTATGCGTACCTTTCTAAGCAACTGAAATGGATCTCTTGGCACGGCTTTCCTTCAAATTCTCTGCCAAACAGCTTTTGTATGAATGATGTAATTGCTATTGATTTAAAGTACAGTCATCTTCGATTCGTCTGGAAACAATCCCAGGATTTGAAGTGGCTAAAATTCCTTAATCTCAGTCACTCCATGTACTTGAGAGAAACCCCTGACTTTTCTAGACTACCAAGTCTTGAGCAGCTCATTCTCAAAGATTGTCCAAGTTTATTAGGGATACACAAATCCATTGGTGATCTCTGTAATATTTTATTGATAAATTTGAAGGATTGTACAAGCCTAAGCAATCTCCCCAAAGAGATATACAAGTTGAAATCTGTGAAAACATTCATCCTTTCTGGTTGTTCAAAGATTGACAAATTGGAAGAAGATATAGCACAGATGGAATCCTTGACAACTCTAATTGCTGATAATACTGCTGTGAAACAGGTCCCCGTTTCAATAGTAACCTCGAAAAGCATTGGATATATATCCTTATGCGGATTTGAAGGACTGGCACGAAATGTTTTTCCTTCTATAATCCTGTCTTGGATGTCACCAACAATGAATCCCCTGTTATTTATGCGTCCGTTTTCTGGCACATCATGTTCTCTGGTTTCAATGAATACACAGGATAATACTTTGAGTGAACTTGCACCAATGCTTAGAAGCCTTCCAAATCTTCGAAGTGTTTTGCTGCGATATGAGACAGAGTCTCAACTATCTAAAGATGTAGAAACCTTTCTGGTTGAACGTGCTGTAAATGTTGCAGAATTAGGAATTTCAAGGCATCACTTGAGGTCATCTTTGATTGGAGTTGGAAGTTACAAAGCATTCTTTGAAATTCTCAACGATAGAATATCTAAGGGATTGGTAACCAATGAGGCTTCTGAAGTTTCACTCCCAATTGACAATAAACCTTATTGGTTGGCCCATATAGGTGAGGGACAGTCAGTGTTTTTCACTGTACCGGAGGACTGTGGCATGAAGGGAATGACTTTGTGTATTGTTTATTTATCAAACCCCGAAATCAAGCCCACCGAATGTCTTACTAGTGTCTTAATAGCTAATTACACAAAGCGCAGCCTGCAGATACACAGGCAAGAAACAGTGATTTCATTTAATGATGAAGATTGGCAGGAGATAATATCACATTTGGCAGGTGGAGACAAGGTGGAGATTTTTGTGACTTTTGGTCATGACTTGGTGGTCAAGAAAACGGCTGTCTATCTTATGTATGGTGAATCGAAAGATATAGAAATTGAGCTGACGAATTGTGAATCGAATGGTGTAGAAATTGAGCCGCCGCATTGTGAATCAATAGTTTCGAAAATGAGGCAATATGTATACCAAATGATATTGAAAGTATGCTGA 3168 0.3873 MEFASSSSLSSSSSSFLTSEPHFIHDVFINFGGEDIGRRFVSHLHSVLLQSQVKTFISQENLHDEGMKLEEHMRAIGHTKITIIVFSKSYTESACSLLELEKIIECHETFGQIVLPVFHEIDPLDVRHQKDDFGKALEDTAHRSYSGEQLQHARSRWSSALNRVAGMTGWDVRHFGHDAALVDVIVNRVKTLLDYRDLFITSYPVGLESRVEDVIKCIENQSTKVCMIGIWGMGGSGKTTLAKAIYNRIYRKFIGKSFIENIRKVWDLKYEKYVLLQEYLLSDVLESKLKVKSVGMGRTMIQNEFSRKKLLIVLDDVNEFGQLENLCGRREWFGQGTVIIITTRDFHLLNQLKVNYVYEMDLLNENESLELFSSLAFGDAKAKEDFSELSRNVVAYCGGLPLALEVLGAYLFDQTSKRVWEGVLSILEKIPNKEVQRKLRISFDSLSNDMEKDILLDVCCFFIGKDRGYVTEILNGCELCADVGIPVLIERSLIKVEKNNKLGMHPLLQEMGREIIRENSRKDPGKHSRLWSQKEVVEVLTKNTGTEAIEGLVLKMDLTSRDCFKTDSFKKMERLRLLQLHHVQLDGNYAYLSKQLKWISWHGFPSNSLPNSFCMNDVIAIDLKYSHLRFVWKQSQDLKWLKFLNLSHSMYLRETPDFSRLPSLEQLILKDCPSLLGIHKSIGDLCNILLINLKDCTSLSNLPKEIYKLKSVKTFILSGCSKIDKLEEDIAQMESLTTLIADNTAVKQVPVSIVTSKSIGYISLCGFEGLARNVFPSIILSWMSPTMNPLLFMRPFSGTSCSLVSMNTQDNTLSELAPMLRSLPNLRSVLLRYETESQLSKDVETFLVERAVNVAELGISRHHLRSSLIGVGSYKAFFEILNDRISKGLVTNEASEVSLPIDNKPYWLAHIGEGQSVFFTVPEDCGMKGMTLCIVYLSNPEIKPTECLTSVLIANYTKRSLQIHRQETVISFNDEDWQEIISHLAGGDKVEIFVTFGHDLVVKKTAVYLMYGESKDIEIELTNCESNGVEIEPPHCESIVSKMRQYVYQMILKVC* 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0939 1055 Pfam TIR domain 25 189 IPR000157 GO:0007165
Vra9g0939 1055 Gene3D Ribonuclease Inhibitor 555 876 IPR032675 -
Vra9g0939 1055 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 28 1011 - -
Vra9g0939 1055 Gene3D - 18 195 IPR035897 -
Vra9g0939 1055 SMART till_3 24 167 IPR000157 GO:0007165
Vra9g0939 1055 CDD AAA 205 346 - -
Vra9g0939 1055 Gene3D - 362 447 IPR042197 -
Vra9g0939 1055 SUPERFAMILY Toll/Interleukin receptor TIR domain 19 170 IPR035897 -
Vra9g0939 1055 PRINTS Disease resistance protein signature 227 242 - -
Vra9g0939 1055 PRINTS Disease resistance protein signature 304 318 - -
Vra9g0939 1055 PRINTS Disease resistance protein signature 397 411 - -
Vra9g0939 1055 PRINTS Disease resistance protein signature 659 675 - -
Vra9g0939 1055 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 28 1011 IPR044974 GO:0006952
Vra9g0939 1055 Pfam NB-ARC domain 208 439 IPR002182 GO:0043531
Vra9g0939 1055 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 456 IPR027417 -
Vra9g0939 1055 Gene3D - 198 357 IPR027417 -
Vra9g0939 1055 ProSiteProfiles TIR domain profile. 23 193 IPR000157 GO:0007165
Vra9g0939 1055 SUPERFAMILY L domain-like 504 833 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0939 Vra-Chr9 11216949 11221938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0939 25 753 WRKY Transcription Factor Family AT4G12020 28.514 1.73e-74 268
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0939 - - vun:114167037 1433.7