Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0936 ATGGAGTTCTTTTCTTCTTCATCATCCTCATCATCTTCATCCTTCCTAGAATCAGAACCCCATTTCATATACGATGTATTCATTAACTTTGGGGGAAAAGACATCGGTAGGAAGTTGGTTTCTCATCTCCACTCTGTCCTTTTACAAGCTCAAGTCAAAACTTTGGTTAACGAGGAAAATCTGCAAGAGGGAATGAAGCTGGAAGAACACATGGGAGCAATAGCAGTCTCTAAGATTGCAATAATCGTTTTTTCCAAAACATACACTGAATCTACATGCTGTCTTCTTGAGCTTGAAAAGATTATTGAATGCCTCGAAACTTTTGGCCAGGTAGTTCTGCCCGTATTTTACGAGATTGAACGATTGGATGTACGTGATCAGAAAGATGATTTTGGAAAAGCGTTGGAAGAAACTGCAAACAAAAGCTATTTAGGAGAACAAGTGGAACATGCGTTGTCCAGGTGGAGACGTGCACTCACCACAGCTGCAGGTATGACTAGTTGGGATGTCAGAGATTTCAGGGATGATGCTGAACTTGTGGAGGTAATTGTTGGGCACGTTCAGACATTACTGGACTATAAAGACTTGTTTATTACCCAATTTCCTGTTGGATTAGAGTCCCACGTGGAAAAGGTTATTGGATGTATTCAAAATCATGACACCAAAGTCTGTATAATAGGGATATGGGGAATGGTAGGAACGGGTAAAACGACCATAGCGAAAGCCATTTACAATCAAATATATCGTCTATTCATTGGTAAGAGTTTTGTTGAAAATATTAGAGAGTTTTGGTCTCGATTATTTAGAACATATGTTGATTTGCAAGAACATCTTCTTGATGATGTCCTAAAATACAAGTTTGAGTTGGAAAACGACGAGATGGGAAGAACCCTGATCGAGACTAAATTCTCCCGAAAAAAGTTACTCATTGTGCTTGATGATGTGAGTGAGTTTGGCCAACTAGAAAACCTATGCGGGAATCGCGAATGGTTTGGTAGGGGAACTCTGATAATCATTACAACTAGAGATGTTAAAATGCTAAACAGACTGAAAGTTAATTATGTTTATAAAATGGATGCTATGAACAAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTGGAGAAGCAAAACCAAGGAAAGAATTTAATGTAATTGCAAGGAACATAGTTGCTAATTGTGGAGGACTACCACTAGCCCTTAAGGTCCTCAGTGGATGGACAATACAAATTCCCTCTGTTCAAGTTCAAGAATGGAAATATGTATCGTTACTGCCAAATGCCTTTGCTAAAATTACAGAGAAATTGAAAATAAGTTTTGACGGTTTAGGTGACATGGAAAAAGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGAGAGAGGCTATGTCACAGAGATACTAAATGCCTGTGGACTACAAGCTGATATTGGAATAACAGTTCTCATAGAACGTGACTTCATAAAAGTTGAAAGGAACAACAAACTTGGAATGCATCCTTTGTTACGAGACATGGGAAGAGAAATTACTCGTGAGGATTGGCCACAGGAACCGGGAAAAAGGAGTCGATTATGGTTTCATGAAGATGTAAAAGATATCCTGAAAACAAAGAGTGGAACGAAAGCTACGCAGGGATTGTCCCTGAAACTATATTCAACCAGCAGAGATTGCTTCGAAGCTCAAGCTTTCAAAAATATGAAGAGTTTAAGATTGCTACAACTGGATCATGTACAACTTACAGGAGACTATGGCTATCTTTCTAAACAACTCAGATGGATTTCTTGGAAAGGGTTTCCTTCTAAATACATTCCAAACAACTTTTGTATGGAAAATGTGGTTGCAATGGATTTAAAGCATAGTCATCTCCAACTCCTATGGAAACAACCACTCAGGAAACAGCCCCAGGTTTTAAAGCAGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTGAGAGAAACACCTGACTTTTCGATACTACCAAGTCTTGAACAGCTCATTTTAAAAGATTGTCCAAGTTTGTGCAACGTACACCCATCAATTGGAGATCTCTGCAATCTATTTCTGATAAATTTGAAGGACTGCACAAGTCTAAGTTGTCTCCCAAGAGAAGTATATAAGCTGAAATCCTTAAGAACTTTCATCCTCTCTGGTTGTTTCAAGATTGACATATTGGAAGAAGATATAGTGCAGTTGGAATCCTTGACAACTCTAGTTACTGAAAATACAGTAGCTGAAAGTACGGCTGTGAAACAATTGCCCTGTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCTCTACGTGGATTTGAAGCATCGTCACATAATATTTTTCCTTCAATCATTCGGTCTTGGATGTCACCAATTGTGAATCCACAATCTTATATTAGCCCGTATTGCATGGATATGGAGAATAATAATGGGCGTGACCTTGCCCCATTGCTCAGCGTCCTTGAAAAGATTCGAACTGTTCTGGTTCAATGTGACACGGAGTTTCAATTATCTAAGCAAGTAAAGAAAATTCTTGTCGAACACAGTGTAAATTTTACGGCGTCAAGAATTTCAAAGCGTCATTTGAGGTTTTCTTTGAATTGTGTTGGAAGTTACAATGATTTCTTCAACACTCTCAACAATAGCATTTCTGAGGGATTGGCAAGCAGTGAGTCTTGTGATGTTTCTCTTCCAGGTGACAACTACCCTTACTGGTTGGTCCATATGGGTGAGGGACATTCTGTTTCTTTCAATGTGCCTCAGAATAGTGGCATGAAGAGAATGATTTTGTGTGTTGTTTATTTAGCAACCCCTGGAATCATGGCAACCGAATGTCTAAGAAATGTCTTAATTGTTAGTTACACAAAATGCACATTACAGATACACAACCATGGCTCAGTAATTTCCATTAACGATGAAGATTGGCATGGCATAATGGCAAATTTAGGATCAGGAGAGAAGGTGGAGATTTTTATGACTTTTGATCATGGACTGGTCGTCTATATGATATGTGGTGAATCAAATTTTGAAATAAAGCCTTACCAAGCCAAAGGAAAATACCTTAAAGAAATTCATTAA 3081 0.3804 MEFFSSSSSSSSSSFLESEPHFIYDVFINFGGKDIGRKLVSHLHSVLLQAQVKTLVNEENLQEGMKLEEHMGAIAVSKIAIIVFSKTYTESTCCLLELEKIIECLETFGQVVLPVFYEIERLDVRDQKDDFGKALEETANKSYLGEQVEHALSRWRRALTTAAGMTSWDVRDFRDDAELVEVIVGHVQTLLDYKDLFITQFPVGLESHVEKVIGCIQNHDTKVCIIGIWGMVGTGKTTIAKAIYNQIYRLFIGKSFVENIREFWSRLFRTYVDLQEHLLDDVLKYKFELENDEMGRTLIETKFSRKKLLIVLDDVSEFGQLENLCGNREWFGRGTLIIITTRDVKMLNRLKVNYVYKMDAMNKNDSLELLSWHAFGEAKPRKEFNVIARNIVANCGGLPLALKVLSGWTIQIPSVQVQEWKYVSLLPNAFAKITEKLKISFDGLGDMEKDIFLDVCCFFIGKERGYVTEILNACGLQADIGITVLIERDFIKVERNNKLGMHPLLRDMGREITREDWPQEPGKRSRLWFHEDVKDILKTKSGTKATQGLSLKLYSTSRDCFEAQAFKNMKSLRLLQLDHVQLTGDYGYLSKQLRWISWKGFPSKYIPNNFCMENVVAMDLKHSHLQLLWKQPLRKQPQVLKQLKFLNLSHSKYLRETPDFSILPSLEQLILKDCPSLCNVHPSIGDLCNLFLINLKDCTSLSCLPREVYKLKSLRTFILSGCFKIDILEEDIVQLESLTTLVTENTVAESTAVKQLPCSIVSSKSIGYISLRGFEASSHNIFPSIIRSWMSPIVNPQSYISPYCMDMENNNGRDLAPLLSVLEKIRTVLVQCDTEFQLSKQVKKILVEHSVNFTASRISKRHLRFSLNCVGSYNDFFNTLNNSISEGLASSESCDVSLPGDNYPYWLVHMGEGHSVSFNVPQNSGMKRMILCVVYLATPGIMATECLRNVLIVSYTKCTLQIHNHGSVISINDEDWHGIMANLGSGEKVEIFMTFDHGLVVYMICGESNFEIKPYQAKGKYLKEIH* 1027
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0936 1026 CDD AAA 228 343 - -
Vra9g0936 1026 Gene3D - 23 196 IPR035897 -
Vra9g0936 1026 Pfam NB-ARC domain 206 424 IPR002182 GO:0043531
Vra9g0936 1026 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 166 IPR035897 -
Vra9g0936 1026 SMART till_3 23 165 IPR000157 GO:0007165
Vra9g0936 1026 Gene3D Ribonuclease Inhibitor 530 788 IPR032675 -
Vra9g0936 1026 Gene3D - 360 445 IPR042197 -
Vra9g0936 1026 ProSiteProfiles TIR domain profile. 22 191 IPR000157 GO:0007165
Vra9g0936 1026 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 198 454 IPR027417 -
Vra9g0936 1026 Pfam TIR domain 24 187 IPR000157 GO:0007165
Vra9g0936 1026 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 1008 IPR044974 GO:0006952
Vra9g0936 1026 Gene3D - 197 355 IPR027417 -
Vra9g0936 1026 PRINTS Disease resistance protein signature 225 240 - -
Vra9g0936 1026 PRINTS Disease resistance protein signature 302 316 - -
Vra9g0936 1026 PRINTS Disease resistance protein signature 395 409 - -
Vra9g0936 1026 PRINTS Disease resistance protein signature 638 654 - -
Vra9g0936 1026 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 1008 - -
Vra9g0936 1026 SUPERFAMILY L domain-like 516 814 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0936 Vra-Chr9 11195162 11199622 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0936 24 781 WRKY Transcription Factor Family AT4G12020 27.604 2.39e-66 243
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0936 - - pvu:PHAVU_010G027900g 1345.1