LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0934	ATGGAGTTTGCATCTTCTTCTTTATCATCATCATCTTCATCCTTCTTAAAATCAGAACCCCATTTCATACACGATGTGTTCATCAACTTTGGTGGAGAAGACATCGGTAGAAGGTTTGTTTCTCATCTCCACTCTGTCCTTTTACAAAATCAAGTAAAAACTTTTATTAGCCAGGAGAATCTGCATGAGGGAATGAAGAAGGAAGAGCACATGAGAGCAATACGACGCACTAAGATTACAATAATCGTTTTCTCCAAATCATACACCGAATCTGCTTGCTCTATTCTTGAGCTTGAAAAAATCATTGAATGCCACGAAACATTTGGTCAAATAGTTCTGCCCGTATTTTACGAGATTGACCCATTGGATGTACGTCATCAGAAGGAAGATTTTGGAAAAGCGTTGGAAGAAACTGCACACAGAAGCTATTTAGGAGAACAACTGCAACATGCGCGGTCCAGGTGGAGCAGTGCACTCAATAGAGTTGCAGGTATGACTGGTTGGGATGTCAGAAATTTCAGGCATGACGCTGAACTTGTGAAGCAAATCGTTAGCCGCGTTCAGATGTTACTTGATTATAAAGAATTATTTATTACTCAATATACTGTTGGATTAGAGTCCCATGTCGAAGACGTGATTGGATGCATTGAAAATAATTCCACCAAACTGTGTATGATTGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCTTGGCCAAAGTGATTTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTATTGAGAATATTAGTGAAGTTTACGATCCAGAAAATGAAAGGTATGTTGATTTGCAAGAAAATCTTCTTTCTGATGTTCTAAAATCCAAGTACGAGGTGGAAAGCGTTAGGATGGGAAGAACTATGATCGAGAATGTGTTTTCTCGAAAAAAATTGCTCATTGTGCTTGATGATGTAACTGCGTTTGGCCAATTAGAAAACCTATGCGGGAGTCGTGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAAATTATGAACTGTTGGACCGACTCAAAGTTAATTATGTTCATCTCATCGGGCTTATGAACGAAAAGGATTCCCTTGAGCTTTTCCGTTGTCATGCCTTTAGAGAAGGAAAACCAAGAAAATACTTCAATGAACTTGCAAGAAACGTAGCTGATTATTCTCGAGGACATCCACTAGCTCTTAATGTCCTTGGGTCATTTTTATGTGATAGGACAATGAAGGAGTGGAAAAGTGTATTGTCGAAACTAAAAAGAACTGCTAGGTCTATGGATAATCATGTTCTAGATGTATTAAAAATAAGTTTTGAAGGTTTACGTGATACAGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGAAAGAAGTTATGTCACAGATATATTAAATGGTTGTGGATTAGATGCTGATATTGGAATAACAATTCTCATAGATTGTGGCCTCATAAAAATTGGAAAGAACAACACACTTGAAATGCGTCCCTTATTTCGAGATATGGGAAGAGAAATTATTCAGGAAAGATGTTCAGAGGAACCGGGGAAAATGAGTCGATTATGGTTTCAGGATGATGTAAAGGACGTACTGAAAAAGAATACTGGGACTGAAGCTATCCAGGGATTGTCTCTAAAACTGCATTCAACAAGCAGAGATTTCTTCAAAGCTAATGCTTTCAAGGAAATGAAGAGATTAAGACTTCTACAACTATATCATGTACAACTTGTCGGAGATTATGGGTGTCTATCTAAAGAACTGAGGTGGATTTGCTGGAAAGGGTTTTCTTCTAAATACATCCCAAACAACTTTCATATGAAAAATGTAATTTCAATTGATTTAAGGCATAGTCATCTTCAACTCGTCTGGAAACAACCACTCTGGAAAAAACCCCAGGTTTTAGAGCGGTTAAAATTCCTTAATCTTAGTCACTCCAGATACCTGATAGAAACACCTGACTTTTCAGTACTACCAAGTCTTGAACAACTCATTCTAAAAGATTGCCCAAGTTTACTTAAGGGATTGGTAACCAATGAAGATTGA	2067	0.373	MEFASSSLSSSSSSFLKSEPHFIHDVFINFGGEDIGRRFVSHLHSVLLQNQVKTFISQENLHEGMKKEEHMRAIRRTKITIIVFSKSYTESACSILELEKIIECHETFGQIVLPVFYEIDPLDVRHQKEDFGKALEETAHRSYLGEQLQHARSRWSSALNRVAGMTGWDVRNFRHDAELVKQIVSRVQMLLDYKELFITQYTVGLESHVEDVIGCIENNSTKLCMIGIWGMGGSGKTTLAKVIYNRIYREFIGKSFIENISEVYDPENERYVDLQENLLSDVLKSKYEVESVRMGRTMIENVFSRKKLLIVLDDVTAFGQLENLCGSREWFGQGTVIIITTRNYELLDRLKVNYVHLIGLMNEKDSLELFRCHAFREGKPRKYFNELARNVADYSRGHPLALNVLGSFLCDRTMKEWKSVLSKLKRTARSMDNHVLDVLKISFEGLRDTEKDIFLDVCCFFIGKERSYVTDILNGCGLDADIGITILIDCGLIKIGKNNTLEMRPLFRDMGREIIQERCSEEPGKMSRLWFQDDVKDVLKKNTGTEAIQGLSLKLHSTSRDFFKANAFKEMKRLRLLQLYHVQLVGDYGCLSKELRWICWKGFSSKYIPNNFHMKNVISIDLRHSHLQLVWKQPLWKKPQVLERLKFLNLSHSRYLIETPDFSVLPSLEQLILKDCPSLLKGLVTNED*	689

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g0934	688	Gene3D	-	17	190	IPR035897	-
	Vra9g0934	688	SUPERFAMILY	"Winged helix" DNA-binding domain	434	540	IPR036390	-
	Vra9g0934	688	Gene3D	-	191	356	IPR027417	-
	Vra9g0934	688	SMART	till_3	23	165	IPR000157	GO:0007165
	Vra9g0934	688	Pfam	NB-ARC domain	206	444	IPR002182	GO:0043531
	Vra9g0934	688	Pfam	TIR domain	24	187	IPR000157	GO:0007165
	Vra9g0934	688	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	189	456	IPR027417	-
	Vra9g0934	688	SUPERFAMILY	Toll/Interleukin receptor TIR domain	19	168	IPR035897	-
	Vra9g0934	688	Gene3D	-	360	447	IPR042197	-
	Vra9g0934	688	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	26	680	IPR044974	GO:0006952
	Vra9g0934	688	Gene3D	Ribonuclease Inhibitor	527	686	IPR032675	-
	Vra9g0934	688	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	26	680	-	-
	Vra9g0934	688	ProSiteProfiles	TIR domain profile.	22	191	IPR000157	GO:0007165
	Vra9g0934	688	PRINTS	Disease resistance protein signature	225	240	-	-
	Vra9g0934	688	PRINTS	Disease resistance protein signature	302	316	-	-
	Vra9g0934	688	PRINTS	Disease resistance protein signature	395	409	-	-
	Vra9g0934	688	PRINTS	Disease resistance protein signature	640	656	-	-
	Vra9g0934	688	Coils	Coil	684	688	-	-
	Vra9g0934	688	SUPERFAMILY	L domain-like	516	678	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0934	Vra-Chr9	11156339	11165164	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0934	24	676	WRKY Transcription Factor Family	AT4G12020	27.653	8.76e-70	246

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0934	-		-	vun:114165946	948.347