Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0933 ATGGAGTTTGCTTCTTTTTCTCCATCATCATCATCATCTTCGTCCTTCTTAAAATCAGAACCCCAATTCATATACGATGTGTTCATCAACTTTGGGGGAGAAGATATCGGTAGAAAGTTCGTTTCTCATCTCCATTCTGCCCTTTTACTAGCTCAAGTCAAAACTTTTATTAGCAAGGAGAATCTTGAGGGAATTAAGCTGGAAGCATACAGGAGAGCAATAGCAAGCTCTAAGATTGCAATAATTGTTTTCTCCAAGACATACACTGAATCTACCTACTGGCGTCTTGAGCTTGAAAAAATCATTGAATGCCGCCAAACATTTGGACAAATAGTTCTTCCACTAATTTACGATATTGTCCGATTGGATGAACGTCATCAGATGGTTGTAAGGGTGTTGGAAAAAGCTACACCAGGAAGCTATTCAGGAGAACAACTGGAACGTCCAATGTCCAGGTGGAGAAGAGCACTAACCAAAGCTGCAGGTATCACTGGTTGGGATTTCAGAGATTTCAGGCACGATGCTGAACTTGTGGAGGAAATTGTTAGACACATTCAAACATTGCTGGACTATACAGACATGTCTATTACCCAATTTCCTGTTGGATTAGAGTCCCACGTGGAAAAGTTGATTGGAATGATTGAAGAACAATCCACTGAAGTCTGTATGATAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCATAGCCAAAGCAATCTACAATCAAATTTATCATTCATTCATTGGTAAGAGTTTTATTGAAAATATTGGACAATTTCGGAATCGAGTAGACAGAAGGCATGTTCATTTGCAAGAAAATCTTCTATATGATGTCTTAAAATCCAAGTTTGAGGTGGAAAGCGATAGGGTGGGAAGAACTATGATCGAGACTCAACTTTCACGAAAAAAGTTGCTCATTGTGCTTGATGGTGTGAATGAGTTTGTCCAATTAGAAAACCTATGCGGGAATCGAGAATGGTTCGGTCAAGGAACTGTGATAATCATTACAACTAGAGATGTTACCGTGCTGAACCAATTAAAAGTTAATCATGTGTATACAATGGATGTTATGAACGAAAATGATTCCCTTGAGCTTTTAAGTTGGCATGCCTTTAGAGAAGCGAAACCAAGAAAAGAATTGAATGAACTTGCAAGAAACATAGTTGGTTATTGTGGAGGGCTACCATTAGCTCTTGAGTTCCTTGGTTCCTATTTATGTGATAGGACAAAGGAAGAGTGGGAAAGTGTATCGTCCAAACTAAAAATAAATCCCTTTAATCAAATACAAGAGAAATTGGAAATGACTAGTTTTGATGGTTTGGATGACATGGTAAAGGATATATTTCTTGATATATGTTGTTTCTTTATTGGTAAAGAGAGGAGCTATGTTACAAAAATACTAAATGGCTGTGGACTGTATGCTGATATTGGAATAACAGTTCTCATAGAACGTGGGCTCATAAAAGTTGAAGGGGCCAACAAACTTCAAATGCATCCTTTGTTACGAGACATGGGAAGAGAAATTATCCGTAAAAGATGCCCGGAGGAACCAGGGAAAAGGAGTCGATTATGGTTTCAGAATGATATAAAAGATGTATTGAAAAAGAATACTGGAACAAAAGCTATTCAGGGATTATCCCTGAAACTGCATTCAACCGGTAGAGATTGCTTTGAAGCTCATGCTTTCAAGGAAATGAAGAGACTAAGATTTCTACAACTGGATCATGTACAACTTACTGGTGATTATGGGTACCTTTCTAAACAACTGAGATGGATTTCTTGGCAAGGGTTTCCTTCTAAATACATACCAAACAAGTTTCATATGGAAAATGTAATTGCAATTGATATAAAACATAGTTATCTTCAACTCGTCTGGCAGCAACCCCAGGTTTTAGAGCAGTTAAAATTCCTTAATCTTAGTCACTCCAAGTACTTAAGAGAAACACCAGACTTTTCAAGACTACCAAGTCTTGAACGGCTCATTTTAAAAGATTGCCCAAGTTTGTGCAAGGTACACCCATCCATTGGACATCTCTACAATCTGCTACTGATAAATTTGAAGAACTGCACAAGTCTAAGCAGTCTCCCCAGAGAGGTATATAAGTTGAAATCTTTAAGAACTTTAATCCTCTCTGGTTGTTTCAAGATTTACATATTTGAACAAGATATAGTGCAGATGGAATCCTTGATAACTCTAGTTACTGAAAATACAGTAGTGAAACAAGTGCCCTGTTCAATTGTAAGCTCTAAAAGCATTGCATATATATGCCTACATAGATTTGAAGGATTGCCAGAAAATATTTTTCCTTCAATCATTCAATCTTGGATGCCACCAACAATGAATCACCATTATTATAATAGTCCGGTTTGCATGGGTATGGAGAATTATAATTCGCGTGACCTTGCGCCATTGCATAGGTGCCTTGCAAATCTTCGAAGTGTTTTGGTTCAATGTGACACAAAGTTTCAACTACATAAGGAAGTGAAAACAATTCTTGTCGAATACTTAGTAAACTTTACAGAATCAAGAATTTCAAATCATCACTTGAGGTTTTCTCTGATTGGTGTTGGAAGTTACAATAACCTCCAAAACACTCTCAGCGATAGCATTTCTGAGGGATTGGCAAGCAGTGAGTCTTGTGAAGTTTCTCTTCCAGGTGACAACCATCCTTATTGGCTGGCCTATATGGGTGAAGGACATTCTGTTTCTTTCACTGTGCCTCAGGATTGTGACATGAAGGGAATGATTATATGCATTGTGTATTTATCAAACCATGGAATCGTGCCAACTGAATGTCTTACAAGTGTCTTAATTGTTAATTACACAAAGTGCACACTGCATATACACAAACATAGTGCAGTAATTTCTTTTAATGATGAAGATTGGCATGTTATAATATCAAATTTAGGATCCGGAGATAAGGTGGAGATTTTTATGACTTTTGATCATAGATTGGTGGTCAAGAACACAGCTGTCTATTTGATATGTGATGAATCAAATGGCTTGGAAATGGGGCCTTGCCCAGGAAAATGCTCTGAATAA 3048 0.3766 MEFASFSPSSSSSSSFLKSEPQFIYDVFINFGGEDIGRKFVSHLHSALLLAQVKTFISKENLEGIKLEAYRRAIASSKIAIIVFSKTYTESTYWRLELEKIIECRQTFGQIVLPLIYDIVRLDERHQMVVRVLEKATPGSYSGEQLERPMSRWRRALTKAAGITGWDFRDFRHDAELVEEIVRHIQTLLDYTDMSITQFPVGLESHVEKLIGMIEEQSTEVCMIGIWGMGGSGKTTIAKAIYNQIYHSFIGKSFIENIGQFRNRVDRRHVHLQENLLYDVLKSKFEVESDRVGRTMIETQLSRKKLLIVLDGVNEFVQLENLCGNREWFGQGTVIIITTRDVTVLNQLKVNHVYTMDVMNENDSLELLSWHAFREAKPRKELNELARNIVGYCGGLPLALEFLGSYLCDRTKEEWESVSSKLKINPFNQIQEKLEMTSFDGLDDMVKDIFLDICCFFIGKERSYVTKILNGCGLYADIGITVLIERGLIKVEGANKLQMHPLLRDMGREIIRKRCPEEPGKRSRLWFQNDIKDVLKKNTGTKAIQGLSLKLHSTGRDCFEAHAFKEMKRLRFLQLDHVQLTGDYGYLSKQLRWISWQGFPSKYIPNKFHMENVIAIDIKHSYLQLVWQQPQVLEQLKFLNLSHSKYLRETPDFSRLPSLERLILKDCPSLCKVHPSIGHLYNLLLINLKNCTSLSSLPREVYKLKSLRTLILSGCFKIYIFEQDIVQMESLITLVTENTVVKQVPCSIVSSKSIAYICLHRFEGLPENIFPSIIQSWMPPTMNHHYYNSPVCMGMENYNSRDLAPLHRCLANLRSVLVQCDTKFQLHKEVKTILVEYLVNFTESRISNHHLRFSLIGVGSYNNLQNTLSDSISEGLASSESCEVSLPGDNHPYWLAYMGEGHSVSFTVPQDCDMKGMIICIVYLSNHGIVPTECLTSVLIVNYTKCTLHIHKHSAVISFNDEDWHVIISNLGSGDKVEIFMTFDHRLVVKNTAVYLICDESNGLEMGPCPGKCSE* 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0933 1015 SUPERFAMILY Toll/Interleukin receptor TIR domain 20 166 IPR035897 -
Vra9g0933 1015 SUPERFAMILY "Winged helix" DNA-binding domain 437 536 IPR036390 -
Vra9g0933 1015 PRINTS Disease resistance protein signature 223 238 - -
Vra9g0933 1015 PRINTS Disease resistance protein signature 300 314 - -
Vra9g0933 1015 PRINTS Disease resistance protein signature 393 407 - -
Vra9g0933 1015 PRINTS Disease resistance protein signature 702 718 - -
Vra9g0933 1015 Gene3D - 358 443 IPR042197 -
Vra9g0933 1015 Pfam TIR domain 25 190 IPR000157 GO:0007165
Vra9g0933 1015 Gene3D - 18 188 IPR035897 -
Vra9g0933 1015 SUPERFAMILY L domain-like 513 778 - -
Vra9g0933 1015 SMART till_3 24 163 IPR000157 GO:0007165
Vra9g0933 1015 Gene3D Ribonuclease Inhibitor 498 805 IPR032675 -
Vra9g0933 1015 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 997 IPR044974 GO:0006952
Vra9g0933 1015 Gene3D - 189 354 IPR027417 -
Vra9g0933 1015 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 453 IPR027417 -
Vra9g0933 1015 Pfam NB-ARC domain 204 437 IPR002182 GO:0043531
Vra9g0933 1015 ProSiteProfiles TIR domain profile. 23 189 IPR000157 GO:0007165
Vra9g0933 1015 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0933 Vra-Chr9 11141262 11146011 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0933 25 748 WRKY Transcription Factor Family AT4G12020 28.993 2.33e-77 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0933 - - vun:114165119 1431.77