LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0927	ATGGCATTTGAGTCTTCTTCACCATCATCCGAATCCGAATGGATACACGACGTGTTCATCAATTTCAGGGGAGTAGACACCCGCAGGACGTTCGTTTCTCATCTCCATTCTTCGCTCTCAAAAGCTGGAGTCAAAACCTTCCTTGACGAGGAGCATCTGCTCAAGGGAATGAAGCTGCAAGAACTATTCCGAGCAATACAAGTGTCTCAGATAGCAATAGTAGTTTTCTCGAAAGGCTACCCTGACTCTAGCTGGTGTCTTGATGAGCTTCAAAAAATATTTCAATGCAGCCAAACATGTGGACTAAGAGTTTTTCCCGTATTTTACTACGTTGAACCATCCGAGATTCGTAACCAGACGGGTGATTTTGGAGATGCGTTGAGAGCAGCCGCAGAACGTGACTATGCAGGAGAACATCTGGAATTTACGTTGTCGAGTTGGAGAGATATACTCACCGACGCTGCAAATTTGTGTGGGTGGGATGCGAAGGATAGGAGAAGGACTGAAGCTGAGCTAGTGCGTGACATTGTTGACTACGTTATTGACCAACTTGATTACAATGTCTTGTCTATCACCCAATTTCCTGTTGGATTAGATCATCCGGTGCAAGTAGTGATTAGGTTTATTAAAAGAATAAAAAAATCTTGTAAGATAGGGATATGGGGAATGGGAGGATCTGGTAAAACTACCATGGCCAAAGCCATCTACAATAAACTTCATCGTTCCTTCGAGAATAAAAGTTTCATTGAAAATATTAGAGAAGTTTGTCAAACAGATAGAAGAAGGCTTGTTCGTTTGCAGGAAAAACTTCTTTCTGATATCCTGAAAGTAAAGATGGAGATACGAAGCGTTGGGATCGGACAAGTTATGATTGACAACAGATTTAATGGAAAAAGGGCGTTCATAGTTCTTGATGATGTTAATAAGTTTGACCAACTAGAAGCACTATCCGGAAATACTGAGTGGATGGGTGAAAGAAGCGTAATAATCATTACGACTAGAGATCTACATCTACTCAAGAGATTTGAAGTTGATTATGTTTATGAAATGAAGGAAATGCAAGCAAATGAGTCCCTTACGCTTTTTAGTAGGCATGCGTTCAGAGAAGAAAAACCAAGAGAAGATTTCAATGAACTTGCAAAAGAAGCAGTTAATTATTGTGGTGGACTACCTCTAGCTCTTGAAGTTCTGGGTTCTTATTTGAGTAATAGGACAATGACTGAGTGGAGAAGTGTGTTGTCAAAACTACAAATAAGTCCCAATCCCGAAGTCCAAGAGAAACTAAGGATAAGTTACGATTTATGTGATGAAATGGAACAGGAAATATTTCTTGATGTATGTTGCGTTTTTAATGGTAAGGACAGAAGCTGTGTGACGGAGGTACTAAATGGCTGTGAACTATGTGCTGATATTGGAATAACTGTCCTCTTAGAGCGTAGCCTAATAAAAATCGTAAAAAACAATAAACTCAAAATGCATCAATTGCTACAAGAAATGGGAAGAGATATTATTCGTGGAGGCTCAAGAAGAGAACCTGGAAAGTACAGTAGATTATGGTTTCAAAAGGATGTACGTGATGTATTGACAAATAGTACCGGGACAGATGCCGTTGAGGGATTGGCTCTGAAATTTGATTTAAACGACAAAGAACACTTTAAAGCTGATGCTTTTAAGGAAATGAGGAGTTTGAGACTGTTGCAACTTCATTATGTAGAACTCATGGGAGATTATTGCCATCTTTCTAAGCAATTGAGATGGATCTACTGGGAAGGGTTTCTTTCAGAGCACATACCTGACAACTTTTATCTGGAAAATGCAATTGCAATTAATTTCAAACACAGTCATCTTAGGCAAGTGTGGAAAGAACCCAAGGATTTGTCGATGTTAAAGTTCCTCAATCTTAGTTATTCCAATTACTTGACTGAAACTCCTGATTTTTCTAAACTTAAAAATCTTGAAAAGCTCATTCTCAAATATTGTCGAAGTTTGCGCTGTGTACACAAATCCATTGGAGATCTCCGTAATATTGTGTTCATAAATTTGAAGGATTGTACAAGCCTTACTAGTCTTCCAAGAGAGATATATAAGTTGAAATCTTTGAAAACTCTCATCCTATCTGGTTGTACAAAGATTGACAAATTGGAAGAAGATATCTCGGAGATGAAATCCTTGACAACTCTAATTGCTGAAAATGCTGTTGTGAAAGTTCCCTTTTCAATAGTAAGCTCCAAAAGCATTGGATATCTTTTTCCATGTGGGTTTGAAGGATTCTCCCATGATGTTTTACCATCTATTATTTGGTGCTGGTCGTCACCGACAATGAATCCCCTGTCTCGTATTCTTCCGTTATGTGGCATATCAGCATCTCTAGTTTCCATGAATATGCAAAACATTGATTTGGGTGACCTAGCACCGATCCTTACCAACCTTTTAAATCTTCGAAGTGTTTGCATGCAATGTGACACGGAGTTTCAAATAACTAAACAAGTAAGAAAATTTTTGAATGAACTAGCATCCTGTACATCAGAAATTTCGGACAATTCCTTGAGATCTTATTTGATTGGAATTGGAAGCTACCAAGAAGAAGACTTCAATACTCTTAACAAGAGCATATCTAAGGAATTGGCAACCAGTGGATCTTGTCATGTTTTTCTGCCAGGAGGCAATTATCCTTTTTGGTTGGCTCATACGGGGGAGGGCCATTCAGTGTCTTTCACTGTGCCTCAGGATTGGGACATGAAGGGAATGGCTCTGTGTGTTTTGTATTTAGCAACACCTGAAACAGCAGCAACTGAGTGTCTTATCAGTGTAGTAATGGTTAATTACACAAAGTACACCATCCAGTTATACAAGCGAGACACAGTGATTTCCTTTAATGATGCAGATTGGCAGGGCATAATATCTCATTTGGAAGCTGGAGACGAGGTGGAGATTTTTCTGTCTTTTAGGAATGAATTGGTGATAAAAAACACAGCCGTCTATCTCATAAATTATGAATTCATTGACATGGAAGTGAAAGCTGTTAGTAAGCCACCTGTTATGAAGGTTTATAGCAGGAAGAGGAATCTTACGGATCAAGAAAGCAGTCGGAAGAGACAATGGTAA	3105	0.3894	MAFESSSPSSESEWIHDVFINFRGVDTRRTFVSHLHSSLSKAGVKTFLDEEHLLKGMKLQELFRAIQVSQIAIVVFSKGYPDSSWCLDELQKIFQCSQTCGLRVFPVFYYVEPSEIRNQTGDFGDALRAAAERDYAGEHLEFTLSSWRDILTDAANLCGWDAKDRRRTEAELVRDIVDYVIDQLDYNVLSITQFPVGLDHPVQVVIRFIKRIKKSCKIGIWGMGGSGKTTMAKAIYNKLHRSFENKSFIENIREVCQTDRRRLVRLQEKLLSDILKVKMEIRSVGIGQVMIDNRFNGKRAFIVLDDVNKFDQLEALSGNTEWMGERSVIIITTRDLHLLKRFEVDYVYEMKEMQANESLTLFSRHAFREEKPREDFNELAKEAVNYCGGLPLALEVLGSYLSNRTMTEWRSVLSKLQISPNPEVQEKLRISYDLCDEMEQEIFLDVCCVFNGKDRSCVTEVLNGCELCADIGITVLLERSLIKIVKNNKLKMHQLLQEMGRDIIRGGSRREPGKYSRLWFQKDVRDVLTNSTGTDAVEGLALKFDLNDKEHFKADAFKEMRSLRLLQLHYVELMGDYCHLSKQLRWIYWEGFLSEHIPDNFYLENAIAINFKHSHLRQVWKEPKDLSMLKFLNLSYSNYLTETPDFSKLKNLEKLILKYCRSLRCVHKSIGDLRNIVFINLKDCTSLTSLPREIYKLKSLKTLILSGCTKIDKLEEDISEMKSLTTLIAENAVVKVPFSIVSSKSIGYLFPCGFEGFSHDVLPSIIWCWSSPTMNPLSRILPLCGISASLVSMNMQNIDLGDLAPILTNLLNLRSVCMQCDTEFQITKQVRKFLNELASCTSEISDNSLRSYLIGIGSYQEEDFNTLNKSISKELATSGSCHVFLPGGNYPFWLAHTGEGHSVSFTVPQDWDMKGMALCVLYLATPETAATECLISVVMVNYTKYTIQLYKRDTVISFNDADWQGIISHLEAGDEVEIFLSFRNELVIKNTAVYLINYEFIDMEVKAVSKPPVMKVYSRKRNLTDQESSRKRQW*	1035

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g0927	1034	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	160	IPR035897	-
	Vra9g0927	1034	Gene3D	-	9	191	IPR035897	-
	Vra9g0927	1034	Gene3D	-	353	436	IPR042197	-
	Vra9g0927	1034	Pfam	NB-ARC domain	215	422	IPR002182	GO:0043531
	Vra9g0927	1034	CDD	AAA	196	346	-	-
	Vra9g0927	1034	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	996	IPR044974	GO:0006952
	Vra9g0927	1034	ProSiteProfiles	TIR domain profile.	14	184	IPR000157	GO:0007165
	Vra9g0927	1034	SUPERFAMILY	L domain-like	493	816	-	-
	Vra9g0927	1034	PRINTS	Disease resistance protein signature	217	232	-	-
	Vra9g0927	1034	PRINTS	Disease resistance protein signature	294	308	-	-
	Vra9g0927	1034	PRINTS	Disease resistance protein signature	387	401	-	-
	Vra9g0927	1034	PRINTS	Disease resistance protein signature	695	711	-	-
	Vra9g0927	1034	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	188	445	IPR027417	-
	Vra9g0927	1034	Gene3D	-	192	347	IPR027417	-
	Vra9g0927	1034	SMART	till_3	15	157	IPR000157	GO:0007165
	Vra9g0927	1034	Gene3D	Ribonuclease Inhibitor	540	736	IPR032675	-
	Vra9g0927	1034	Coils	Coil	249	269	-	-
	Vra9g0927	1034	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	19	996	-	-
	Vra9g0927	1034	Pfam	TIR domain	16	180	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0927	Vra-Chr9	11084700	11089326	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0927	8	740	WRKY Transcription Factor Family	AT4G12020	29.249	4.01e-76	273

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0927	-		-	gmx:100815297	1229.16