LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0924	ATGGCATTCGAGTCTTCTTCACCATCAGCGAAATCTGAATGGATATACGACGTGTTCATCAATTTCAGGGGAGTAGACACCCGCAAGAAGTTCGTTTCTCATCTCCATTCTTCGCTCTCAAAAGCTGGAGTCAAAACCTTCCTTGACGAGGAGAATCTGCTCAAGGGAATGGAGCTGCAAGAACTATTGCGAGCAATTCAAGTATCTCAGATAGCAATAGTAGTTTTCTCCAAAAGATACGCTGAATCTAGTTGGTGTCTTGACGAGCTTCAAAAAATCTTTCAATGCCGCCAAACTTGTGGCCTAAGAGTTGTGCCTGTATTTTACTATGTTGAACCGTCCGAAGTACGTCACCAGACGGGTGATTTTGGAGATGCGTTGAGAGCAGCTGCAGAAAGTAGCTATGCAGGAGAACATCTGGAATTCGCTTTGTCGAGTTGGAGACGCACACTCACCGACGCTGCAAATTTGTCTGGGTGGAATGCCACGGATCGGAGGACTGAAGCTGAGCTAGTGCGCGACATTGTTAACCACGTTATTGCCAATCTTGATTACAATGCCTTTTCTATCACCAAATTTCCTGTTGGATTAGATCATCCGGTGCAAGAAGTGATTAGATTTATTGAAAGAACCAAAGGCTGTTGTAAGATAGGGATATGGGGAATGGGAGGATCTGGTAAAACTACTATTGCTAAAGTCATCTACAATAAACTTCATCGTTTATTCGAGAATAAAAGTTTCATTGAAAATATTAGAGAAGTTTGTCAAACAGATAGAAGAAGAGGGCTTGTTCGTTTGCAGGAAAAACTTCTTTCTGATATCCTGAAAGTAAAGGTGGAGATACAAAACGCTGGGATCGGACAAGGTATGATTGACAACAGATTTATTGGAAAAAAGGCGCTCATTGTTCTTGATGATGTGAATGAGTTTGACCAACTAGAAGCACTATGCGGAAATACTGAGTGGATGGGTGAAAGAAGCGTAATAATCATTACAACTAGAGATCTGCATTTACTCAAGAGATTTGAAGTTAATTATGTTTATGAAATGAAGGAAATGGAAGTAGATGAGTCTCTTGAACTTTTTAGTAGGCATGCTTTCAGAGAAGCAAAACCAAGAGAAGATTTCAATGAAGTTGCAAAAGATGCAGTTTCTTATTGTGGTGGACTACCTCTAGCTCTTGAAGTTCTGGGTTCTTATTTGAGTAATAGGACAATGACTGAGTGGAGAAGTGTGTTGTCAAAACTAAAAATAAGTCCAAATACCCAAGTCCAAGAGAAACTAAGGATAAGTTTTGACAATTTATGTGATCAAATGGAAAAAGAAATATTTCTTGATGTATGTTGTGTTTTTATTGGTAAGGACAGAGGCTGTGTGACGGAGGTACTAAATGGCTGTGGACTATATGCTGATATTGGAATAACTGTCCTCTTAGAGCGTGGCCTCATAAAAGTCGAAAAGAACAACAAACTCAGAATGCATCATTTGCTACAAGACATGGGAAGAGAGATTATTCGTGAACTTTCAAGAAAAGAACCTGGGAAGCGCAGTAGATTATGGTTTCAAGAGGATGTACGTGATGTATTGACAAATAGTACCGGGACAGATGCTGTTGAAGGACTGGCTCTGAAATTGAATTTAAACAACAGAGAATGCTTTAAAGCTGATGCTTTTGAGGAAATGAGGAGTTTGAGACTGTTGCAACTTCATCATGTAGAACTCATGGGAGATTATGGCCATCTTTCTAAGCAATTGAGATGGATCTGTTGGCAAGGGTTTCCTTCAAAGCACATACCTGAAAACTTTTATCTGGAAGATGCAATTGCAATTAATTTCAAACACAGTAATCTTAGACAAGTGTGGAAAGAACCCAAGGTTTTGTTGATGTTAAAGTTCCTCAATCTTAGTCATTCCAAGTACTTGACTGAAACTCCTGACTTTTCTGGACTACCATATCTTGAAAAGCTCATTCTCAAATATTGTCCAAGTTTGCGCTGTGTACACAAGTCCATTGGAGATCTCTGTAATATTGTGTTGATAAATTTGAAGAATTGTACAAGCCTTAGCAGTCTTCCAAGAGAGATATATAAGTTGAAATCTTTGAAAACTCTCATCCTATCTGGTTGTACGAAGATTGACAAATTGGAAGAAGATATAGCGGAGATGAAATCCTTGACAACTCTAATTGCTGAAAATGCTGTTGTGAAAGTTCCCTTTTCAATAGTAAGCTCCAAAAGCATTGGATATCTTTTTCCATGTGGGTTTGAAGGATTATCCCATGATGTTTTACCATCTATTATTTGGTGCTGGTTGTCACCGACAATGAATCCCCTGTCTAGTACTCTTCCGTTATGTGGCATATCAGCATCTCTAGTTTCCATGAATATGCAAAACATTGATTTGGGTGACCTAGCACCGATCCTTACCAACCTTTTAAATCTTCGAAGTGTTTGGGTGCAATGTGACACGGAGTTTCAAATAACTAAACAAGTGAGAAAAATTTTGAATGACGTAGGATGGGTACATTTCACTGAGCTAGGAATAGCATCCTGTACATCAGAAATTTCAGACAATTCCTTGAGATCTTATTTGATTGGAATCGGAAGCTACCAAGAAGAAGACTTCAATACTCTTAACAAGAGCATATCTAAGGAATTGGCAACCAGTGGATCTTGTCATGTTTTTCTGCCAGGAGGCAATTATCCTTTTTGGTTGGCTCATACGGGGGAGGGCCATTCAGTGTCTTTCACTGTGCCTCAGGATTGGGACATGAAGGGAATGGCTCTGTGTGTTTTGTATTTAGCAACACCTGAAACAGCAGCAACTGAGTGTCTTATCAGTGTAGTAATGGTTAATTACACAAAGTACACCATCCAGTTATACAAGCGAGACACAGTGATTTCCTTTAATGATGCAGATTGGCAGGGCATAATATCTCATTTGGAAGCTGGAGACGAGGTGGAGATTTTTCTGTCTTTTAGGAATGAATTGGTGATAAAAAACACAGCCGTCTATCTCATAAATTATGAATTCATTGACATGGAAGTGAAAGCTGTTAGTAAGCCACCTGTTATGAAGGTTTATAGCAGGAAGAGGAATCTTACGGATCAAGAAAGCAGTCGGAAGAGACAATGGTAA	3138	0.3932	MAFESSSPSAKSEWIYDVFINFRGVDTRKKFVSHLHSSLSKAGVKTFLDEENLLKGMELQELLRAIQVSQIAIVVFSKRYAESSWCLDELQKIFQCRQTCGLRVVPVFYYVEPSEVRHQTGDFGDALRAAAESSYAGEHLEFALSSWRRTLTDAANLSGWNATDRRTEAELVRDIVNHVIANLDYNAFSITKFPVGLDHPVQEVIRFIERTKGCCKIGIWGMGGSGKTTIAKVIYNKLHRLFENKSFIENIREVCQTDRRRGLVRLQEKLLSDILKVKVEIQNAGIGQGMIDNRFIGKKALIVLDDVNEFDQLEALCGNTEWMGERSVIIITTRDLHLLKRFEVNYVYEMKEMEVDESLELFSRHAFREAKPREDFNEVAKDAVSYCGGLPLALEVLGSYLSNRTMTEWRSVLSKLKISPNTQVQEKLRISFDNLCDQMEKEIFLDVCCVFIGKDRGCVTEVLNGCGLYADIGITVLLERGLIKVEKNNKLRMHHLLQDMGREIIRELSRKEPGKRSRLWFQEDVRDVLTNSTGTDAVEGLALKLNLNNRECFKADAFEEMRSLRLLQLHHVELMGDYGHLSKQLRWICWQGFPSKHIPENFYLEDAIAINFKHSNLRQVWKEPKVLLMLKFLNLSHSKYLTETPDFSGLPYLEKLILKYCPSLRCVHKSIGDLCNIVLINLKNCTSLSSLPREIYKLKSLKTLILSGCTKIDKLEEDIAEMKSLTTLIAENAVVKVPFSIVSSKSIGYLFPCGFEGLSHDVLPSIIWCWLSPTMNPLSSTLPLCGISASLVSMNMQNIDLGDLAPILTNLLNLRSVWVQCDTEFQITKQVRKILNDVGWVHFTELGIASCTSEISDNSLRSYLIGIGSYQEEDFNTLNKSISKELATSGSCHVFLPGGNYPFWLAHTGEGHSVSFTVPQDWDMKGMALCVLYLATPETAATECLISVVMVNYTKYTIQLYKRDTVISFNDADWQGIISHLEAGDEVEIFLSFRNELVIKNTAVYLINYEFIDMEVKAVSKPPVMKVYSRKRNLTDQESSRKRQW*	1046

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g0924	1045	SMART	till_3	15	157	IPR000157	GO:0007165
	Vra9g0924	1045	Gene3D	-	188	347	IPR027417	-
	Vra9g0924	1045	Gene3D	Ribonuclease Inhibitor	541	737	IPR032675	-
	Vra9g0924	1045	Pfam	TIR domain	16	181	IPR000157	GO:0007165
	Vra9g0924	1045	Pfam	NB-ARC domain	201	428	IPR002182	GO:0043531
	Vra9g0924	1045	Gene3D	-	9	185	IPR035897	-
	Vra9g0924	1045	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	19	1007	-	-
	Vra9g0924	1045	SUPERFAMILY	"Winged helix" DNA-binding domain	423	529	IPR036390	-
	Vra9g0924	1045	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	1007	IPR044974	GO:0006952
	Vra9g0924	1045	SUPERFAMILY	L domain-like	512	818	-	-
	Vra9g0924	1045	Gene3D	-	353	436	IPR042197	-
	Vra9g0924	1045	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	191	446	IPR027417	-
	Vra9g0924	1045	CDD	AAA	195	346	-	-
	Vra9g0924	1045	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	160	IPR035897	-
	Vra9g0924	1045	PRINTS	Disease resistance protein signature	216	231	-	-
	Vra9g0924	1045	PRINTS	Disease resistance protein signature	294	308	-	-
	Vra9g0924	1045	PRINTS	Disease resistance protein signature	387	401	-	-
	Vra9g0924	1045	PRINTS	Disease resistance protein signature	696	712	-	-
	Vra9g0924	1045	ProSiteProfiles	TIR domain profile.	14	183	IPR000157	GO:0007165

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0924	Vra-Chr9	11048884	11054075	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0924	8	741	WRKY Transcription Factor Family	AT4G12020	28.685	9.17e-76	272

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0924	-		-	gmx:100815297	1309.66