Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0920 ATGGCATCCGTGTCTTCTTCTCTTTCGTTTTTCTCAAAATTAGTCTCAGAGGTGTTCATCCATTGTTTGGAAGACGACATCCATGAAAATTTCGTTTCTCATCTGAGGTCTGCCCTTTTACAAGCTGGAGTAGAACCTTCTCTCGTTGCCGTGGGAAAGCTGTCAAAAAAGTTTATGCCATCAGTTACAAGGTTTCAGATTGGAATAATTGTTTTTACCAAAGCATACATTCAATCTTGTCGGTGTGTTCAAGACCTTGCGAGAATCATTGAATGTCATGAAACTCACGGCCTAATGGTTATTCCTGTGTTTTACGATATTGACCCATCCTATGATCAGAAGGCTGATGTTGATCCATCCCATGTACCTGATCAGAAGCGTGATATTGATCCATCCCATGTAGACGATCAGAAGCGTGATGTTGATCCATTCCATATCAGTAGTGTTTCGACAAATCCGTTTAGAGAACTGGAAGAGGCCGAGACGAAGACTGGAAGGAATGATGCTGAACTAGTGGAGGAAATTGTTAAGTCTGTTCTCGCTAAACTAGACCGCGCCTTGCCTGTAACTAAATTTCCTGTTGAATTAGAAATCCACGTGAAAAATGTGATTGGATTGTTTGAAAATCAACCCAACAAAGTCTGTATGATAGGGATATGGGGAATGGGAGGATCTGGTAAAACTACCTTAGCGAAAGCAATCTACAATAAAATTCCTTTTACATTTGGTGATAAAAGTTTCATTCAAGATATTAGAAAAGTTTGTCAAACAGATGGCATAAGAGGCCTTGTTCAATTACAAGAGCAACTTCTGTCCGATGTCCTTAAATATGTGAAAATAGAGAGTGGTGATATGGAAAAAACTACTATCGAGAACCGTCTTTCTAGAAAAAAGTTGTTCATTGTGCTTGACGATGTGAATGAGATAGACCAACTAAAACACCTATGTGGAAACGGTAAATGGTTTGGTGCGGGAAGTGTAATAATCATTACAACTAGACATTTAGACCTGCTTTATCAACATAAAGTTGATTATGTTTATGAGATGGATGAACTGGACGAAAATGACTCGGTTGAGCTTTTTAGTTGGCATGCTTTTAGGAAAGCAAAACCAAGAGAAGACTTCAATGAACTTGCAAGATCAGCGGTTGATTATTGTGGTGGACTACCACTGGCTCTTGAAGTCCTTGGTTCTTATTTAAGTAAGAGGTCAGAGAATGAATGGAGAAGTGTATTGTCAAAACTAGAAATAATTCCCAATACTCAAATTCAGAACATCCTAAGAGTAAGCTTTGACGGCTTATGTAGTGAAATGGAAAAGGATATATTTCTTGATGTATGCTGTTTCTTTATTGGTAAAGAGAGAGACTATGTCACGGAGATACTAAATGGCTGTGGACTACGTGCTGATATTGGAATAAAAGTTCTTATAGAACGTGGTCTTGTAAAAATTGAAAAGAACAATAAACTTGGAATGCATCATTTGCTTCGGGACATGGGACGAGAGATCGTGCGTCAAACTTCAACAATGCAACCTGGGAAACGCAGTAGATTGTGGTTTCTCAAGGATGTACGTCACGTATTGACCAAGAATACTGGGACAGAAGCTATTCTGGGATTGTCTTTGAACACTGACTGGAGATTATAG 1647 0.3886 MASVSSSLSFFSKLVSEVFIHCLEDDIHENFVSHLRSALLQAGVEPSLVAVGKLSKKFMPSVTRFQIGIIVFTKAYIQSCRCVQDLARIIECHETHGLMVIPVFYDIDPSYDQKADVDPSHVPDQKRDIDPSHVDDQKRDVDPFHISSVSTNPFRELEEAETKTGRNDAELVEEIVKSVLAKLDRALPVTKFPVELEIHVKNVIGLFENQPNKVCMIGIWGMGGSGKTTLAKAIYNKIPFTFGDKSFIQDIRKVCQTDGIRGLVQLQEQLLSDVLKYVKIESGDMEKTTIENRLSRKKLFIVLDDVNEIDQLKHLCGNGKWFGAGSVIIITTRHLDLLYQHKVDYVYEMDELDENDSVELFSWHAFRKAKPREDFNELARSAVDYCGGLPLALEVLGSYLSKRSENEWRSVLSKLEIIPNTQIQNILRVSFDGLCSEMEKDIFLDVCCFFIGKERDYVTEILNGCGLRADIGIKVLIERGLVKIEKNNKLGMHHLLRDMGREIVRQTSTMQPGKRSRLWFLKDVRHVLTKNTGTEAILGLSLNTDWRL* 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0920 548 ProSiteProfiles TIR domain profile. 14 183 IPR000157 GO:0007165
Vra9g0920 548 Pfam TIR domain 18 114 IPR000157 GO:0007165
Vra9g0920 548 SUPERFAMILY "Winged helix" DNA-binding domain 422 528 IPR036390 -
Vra9g0920 548 Coils Coil 545 548 - -
Vra9g0920 548 MobiDBLite consensus disorder prediction 115 143 - -
Vra9g0920 548 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 540 - -
Vra9g0920 548 Gene3D - 351 435 IPR042197 -
Vra9g0920 548 PRINTS Disease resistance protein signature 216 231 - -
Vra9g0920 548 PRINTS Disease resistance protein signature 293 307 - -
Vra9g0920 548 PRINTS Disease resistance protein signature 386 400 - -
Vra9g0920 548 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 540 IPR044974 GO:0006952
Vra9g0920 548 Pfam NB-ARC domain 199 417 IPR002182 GO:0043531
Vra9g0920 548 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 192 445 IPR027417 -
Vra9g0920 548 Gene3D - 15 179 IPR035897 -
Vra9g0920 548 MobiDBLite consensus disorder prediction 115 147 - -
Vra9g0920 548 SUPERFAMILY Toll/Interleukin receptor TIR domain 14 111 IPR035897 -
Vra9g0920 548 Gene3D - 180 346 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0920 Vra-Chr9 11015674 11018317 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0920 25 543 WRKY Transcription Factor Family AT4G12020 29.828 1.27e-60 215
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0920 - - vra:106773320 856.67