LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0917	ATGGCATCTGCGTCTTCTTCTTCGTCTTTCTCAAAGTTCAGAATCGAAGGCGACGTGTTCATCCATTGTTTGGGATACGACATCCGTCGGAATTTCGTTTCTCATCTCAGTTCTGCCCTTTTGCAGGCTGGAGTAAAACCTTGCCTCCTTGCCGTGGAAATGCAGCAGGAACAATTTGTAGCATCAATTGAAGGGTTTCAGATTGGAATAGTTGTTCTCAACAAGTCATACTTTGAATCTTTTCAATGTGTTGATGAACTTGTGAGAATCATTGAATGTCACGAAACTCACGGCCTAACCGTTATGCCCGTGTTTTACGAAATGGATCGATCCGATTTTGGTAATATGTTGAAAGCAACTGCAAGAGAGGTCATGAAAGTTGAACACATAATTTGGTCAGGGGAATATCAGAAAACATGGTTCCAGAGGTGGAATGTGGCACTCACCAAAGCTGGAACTTTGCCTACTTGGGAGGAGAGCGAACACAGGAGTGATGCTGAACTAGTGGAGAAAATTGTTAAGTCTGTTCTCGCCAAACTAGACTGCCCATTGGCTATAACTAAATTTCCTATTGGGTTAGAACCCCACGTGAAAAATGTGATTGGATTCTTTGAAAATCAACCCACCAAAGTTTGTATGATAGGGATATGGGGAATGGGAGGATCGGGTAAAACTACCGTAGCCAAAGCTATCTACAATCAGATTCCTTATGCATTTGATGATAAAAGTTTCATTCAAGGTATTAGAGAAGTATGTGAAACGGATGACAGAGGCCTTGTTCATTTACAAGAAAAACTTCCTTCAGATGCCCTAGAAACAAATGTTAAAATAGAGAGTGGTGAGATGAAAAAAATTTCGTTCGAGGACAGACTTTCTGGAAAAAAGTTGTTCATTGTGCTTGACGATGTGAATGAGATAGATCAACTAAAAGACCTACTTGGAAATGATAAACGGTTTGGTCAAGGAAGTGTAATAATCATTACAACTAGAAATTTAGAGCTGCTTTATCAACTTAATGTTGATTATGTTTACGAGATGGACACAATGGACGAAAATGACTCCGTTGAGCTTTTTAATTGGCATGCTTTTGGAGAAGCAAAACCAAGAGAAGACTTCATTAAACTTGCAAGATCTGCAGTTTCTTATTGTGGTGGACTACCACTCGCTCTTGAAGTCCTTGGTTCTTATTTAAGTAAGAGGTCAGTGAATGAATGGAGAAGTGTATTGTCGAAACTAGAACTAATTCCCAATACTCAAGTTCAGAACATACTAAGAACAAGCTTTGACGGCTTATGTCTAATGGAAAAGGATATATTTCTTGATGTATGTTGTTTTTTTATTGGTAAAGACAGAGACTATGTTACAGAAATACTAAAGGGTTGTGGACTACATGCTGATATTGGAATAAAAGTTCTCATAGAACGTGGTCTTATAAAAATTGAAAAGAACAATGAACTTGGAATGCATCCTTTGCTCCGGGATATGGGACGAGAGATTGTGCGTCAAACTTCAACAATTCAACCTGGGAAGCGCAGAAGATTGTGGCTTCACAAGGATGTACTTGATGTATTGACAAAGAATACTGGGACCGAAGCTATCGAGGGATTGTCTCTGAACTGTCAGTTTACAAGCAGTGATTTCGATTTCGTCAAAGCTTGTGCTTTTGAGAAAATGAAGAGGTTGAGATTCTTGCAACTTGATCATGTACAAGTGAATGGAGATTATGGGTATCTTTCTAAGCAATTGAGATGGATCTATTGGCAAGGATTTCCTTTAGAATACATACCTATCAACTTTTATCTGAAAAAAGCAATTGTGATTGATTTCCAACGCAGTAATCTTACACTAATGTGGAGAGAACCCCAGGTGTTGCGGTGGCTGAAAATCCTCAATCTTAGTTATTCCATGTTCTTAATTGAAACTCCCGACTTTTCAAAACTACGAAGTCTTGAAAAGCTCATTGTCAAACATTGTCCAAGATTGCGCAATGTGCACCAATCCATTGGAGATCTCCGCAAACTTGTGCTAATAAATTTGAAAGGCTGTACAAAGCTACGCAATCTTCCAACTGAGACATATAAGTTGAAATCTTTGAAAACTCTCATCCTGTCTGGTTGTTTGAAGATTCACATATATGAAAAAGATATATTGTGTATGGGATCATTGACAACTCTAATTTCTGAAAATACTGCTGTGAAACAAGTTCCCTTTTCAATAGTAAGCTCAAAAAGCATTGGACATATACTTCTGGGAGGAAATAATGGATTATCATTTACTGTTTTTCAATCTATCATTTCGTCTTGGATATCACCTAAAATTAATTTCTTGTCTGGTATTCGTCCGTTTCGGGGCATATCTTCATCTCTAGTTTCCATGAGTATGGAAGATAATGATTTGGGTGATCTAGCACCAATCCTTAGCAGCGATTTAAATATTCTTAATGTTTTGGTGCAATGTGACGTGGAGTTTCAAAGATACCAACAAGTAATGGCAATTTTGGATGAGATACGAGGTCTAAACTTGACTGAATTTGAAATAAGACCATCTACACCAGAAACTTCAAAGCATCCTTTAAGACCTTATTTGATTGAATTCGGAAGTTACCAAGAAGAAGTCTTCGATATTCTCAGCAAGAGCATATTTGAGGGATCAGAAAACAGTGCATCTTGTGATGTTTTTCTCCCTGGCAACAAAATACCTTATTGGTTAGAGCATATGGGCGAGGGACATTCAGTAACTTTTACTATACCTGAGGGTCGTCGCATAAAGGGGATGACTTTGTGTGCTGTAAATTTATATAACCCCAGACACATTGCAACAACTGAATATCTTATTAGTATCTTAATGGTTAATTATACTAAGTGCACAATCCAGATATACAGGAGAAGGACAGTACAGTCCTTTAGTGATGTAGATTGGCAGGGCATAATAACAAATTTGGGACCTGGAGACAAGGTGGAGATTTTTGTGATTTTTGGAGATAAATTCCTAGTGAAGAAGACAGCTGTCTATCTAATGTGTGATGGATTAATTGACAAGGAAATGAATCCTTCTCTTGATCCAAAGAATATTGATTAA	3078	0.3788	MASASSSSSFSKFRIEGDVFIHCLGYDIRRNFVSHLSSALLQAGVKPCLLAVEMQQEQFVASIEGFQIGIVVLNKSYFESFQCVDELVRIIECHETHGLTVMPVFYEMDRSDFGNMLKATAREVMKVEHIIWSGEYQKTWFQRWNVALTKAGTLPTWEESEHRSDAELVEKIVKSVLAKLDCPLAITKFPIGLEPHVKNVIGFFENQPTKVCMIGIWGMGGSGKTTVAKAIYNQIPYAFDDKSFIQGIREVCETDDRGLVHLQEKLPSDALETNVKIESGEMKKISFEDRLSGKKLFIVLDDVNEIDQLKDLLGNDKRFGQGSVIIITTRNLELLYQLNVDYVYEMDTMDENDSVELFNWHAFGEAKPREDFIKLARSAVSYCGGLPLALEVLGSYLSKRSVNEWRSVLSKLELIPNTQVQNILRTSFDGLCLMEKDIFLDVCCFFIGKDRDYVTEILKGCGLHADIGIKVLIERGLIKIEKNNELGMHPLLRDMGREIVRQTSTIQPGKRRRLWLHKDVLDVLTKNTGTEAIEGLSLNCQFTSSDFDFVKACAFEKMKRLRFLQLDHVQVNGDYGYLSKQLRWIYWQGFPLEYIPINFYLKKAIVIDFQRSNLTLMWREPQVLRWLKILNLSYSMFLIETPDFSKLRSLEKLIVKHCPRLRNVHQSIGDLRKLVLINLKGCTKLRNLPTETYKLKSLKTLILSGCLKIHIYEKDILCMGSLTTLISENTAVKQVPFSIVSSKSIGHILLGGNNGLSFTVFQSIISSWISPKINFLSGIRPFRGISSSLVSMSMEDNDLGDLAPILSSDLNILNVLVQCDVEFQRYQQVMAILDEIRGLNLTEFEIRPSTPETSKHPLRPYLIEFGSYQEEVFDILSKSIFEGSENSASCDVFLPGNKIPYWLEHMGEGHSVTFTIPEGRRIKGMTLCAVNLYNPRHIATTEYLISILMVNYTKCTIQIYRRRTVQSFSDVDWQGIITNLGPGDKVEIFVIFGDKFLVKKTAVYLMCDGLIDKEMNPSLDPKNID*	1026

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g0917	1025	Gene3D	-	15	176	IPR035897	-
	Vra9g0917	1025	Pfam	TIR domain	18	179	IPR000157	GO:0007165
	Vra9g0917	1025	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	187	441	IPR027417	-
	Vra9g0917	1025	Coils	Coil	1024	1025	-	-
	Vra9g0917	1025	Gene3D	-	177	343	IPR027417	-
	Vra9g0917	1025	Gene3D	-	348	432	IPR042197	-
	Vra9g0917	1025	SMART	till_3	16	154	IPR000157	GO:0007165
	Vra9g0917	1025	Gene3D	Ribonuclease Inhibitor	531	859	IPR032675	-
	Vra9g0917	1025	SUPERFAMILY	"Winged helix" DNA-binding domain	419	524	IPR036390	-
	Vra9g0917	1025	SUPERFAMILY	L domain-like	549	815	-	-
	Vra9g0917	1025	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	20	1005	-	-
	Vra9g0917	1025	PRINTS	Disease resistance protein signature	213	228	-	-
	Vra9g0917	1025	PRINTS	Disease resistance protein signature	290	304	-	-
	Vra9g0917	1025	PRINTS	Disease resistance protein signature	383	397	-	-
	Vra9g0917	1025	PRINTS	Disease resistance protein signature	693	709	-	-
	Vra9g0917	1025	SUPERFAMILY	Toll/Interleukin receptor TIR domain	6	153	IPR035897	-
	Vra9g0917	1025	ProSiteProfiles	TIR domain profile.	15	180	IPR000157	GO:0007165
	Vra9g0917	1025	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	20	1005	IPR044974	GO:0006952
	Vra9g0917	1025	Pfam	NB-ARC domain	195	414	IPR002182	GO:0043531

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0917	Vra-Chr9	10980077	10984870	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0917	18	739	WRKY Transcription Factor Family	AT4G12020	29.491	2.21e-76	273

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0917	-		-	vun:114167169	1781.15