Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0914 ATGTCTTACACTTCATCATCTTCAAAATCTAAGCTCCGATGGATATACGATGCGTTCATCAGTTTCCGTGGGGAAGACACTCGTAAGAATTTCGTTTCTCATCTCTATTCCGCTCTTGCAAATGCCGGGGTCAACACTTTCTTGGACGATGAGAAGCTTGCCAAGGGACAACAGCTGAAAACAGAACTGTTTCATGCAATAGAAGGCTCTCAAATTTCCATTGTTGTTTTTTCCGAAAACTACATTTCCTCTAGATGGTGTCTCGACGAACTAGTCAAAATCATGGAATGCCATGCTTCTAGAGGTCAAGTGGTTTTGCCCGTGTTTTACGGCGTTTTCCCTTGGTTTCTACGTGACCTTAACGATGTTACTTTCGAAGTCATTCTGGAAAAAGCTAGTGACCTCCACCGGGTGAAACAATGGAAGAAAGCGCTGGGCGAAGCAGCAGGTTTTGCAGGGTGGGATGTTTCAAATTACAGAAATGAAAACTTTGTTGTGAAGGAAATTGTTAGTGAAGTTTTGGAAAGACTAGATAGAACATACATGTCTATTACAGACTTTCCAGTTGGATTGGAATGTCGTGTGGAACATTGTATTGGCCTTCTAAGAAAGGAAACAAGAGGAGCTTATATATTAGGGATTTGGGGAATGGGAGGGATTGGTAAAACAACCATAGCCAAAGCCATCTACAATGAAATTCGATATGAATTTAAACATAAAAGTTTCCTAGCAAATATAAGAGAAGTTTGGCAAAGAGATCAAGGGCAGATTGATTTACAAGAACGACTTCTTTCAGATATCCTGAAAACAGAAAAGGTGAAGGTTTATAGCAGTGATTGGGGAAAAGCAATGATCAAGGAAACGCTTTGCACCAAAAGAGTACTTGTTGTACTCGATGATGTAAATACATTAGAACAATTAAGTGCACTATGTGGAAATGGTAATGGGATTGTTCAAGGAAGTGTAATAATCATTACAACAAGAGATGTACGTCTACTCAATGTTCTTGAAGTTGACCATGTATATGAAGTGGAGGAAATGAATGAGATTGAGTCCCTTGAGCTTTTCAGTTGGCATACTTTTAAGGAAGCAAATCCACCAGAAGGTTTCCTTGAACTGTCAAAACAAGTAGTCACTTACTGTGGAGCACTACCTCTAGCTCTTGAAGTTCTTGGATCTTATCTATACAAGAGAAGAGAAAAAGAGTGGCAAAGTGTATTATCAAAACTGAAAGAAATACCAAATGATAAAATACAAGAGAAATTGAAAATAAGCTACGATGGTTTAACCGATCATACTGAGAAGGACATATTCCTTGACATATGTTGCTTCTTTATCGGTAAGGACAGAGGCTATGTCACAGAGATACTAAATGGCTGTGGACTTCATGCTGAAATTGGAATAACAGTTCTGATAGAAAGGAGCCTCATAAAAGTTGAAAAGAATAACAAACTTGGAATTCATGATTTGCTACGAGACATGGGCAGAGAAATTGTTCGTCAAAGTTCACCACTAGAACCACAGAAGCGCAGTCGGTTGTGGGTTCATGATGATGTACTTGATATATTGACAGAACATACTGGAACAGGAGTCATTGAGGGATTGGCTTTGAAGATGCAAANAACCAGTGGAGTTTGTTTTGGTACTGAAACATTTGGGAAAATGAAGAGACTGAGACTTTTGAAACTTGATAATGTACAAGTAGCTGGAGATTATGGGCATCTTCCCAAACAACTAAGATGGGTTGATTGGAAAGCATTTTCATTAACCCACATACCTGAAAACTTTTATCAGGAAAACATAGTTGCTATTGACTTAAAATACAGTTATCTTAAACTGGTATGGAAGGTGCCTCAGTTTCTGGAGAGGCTAAAATTTCTCAATCTTAGTCATTCCAAGTACTTATCAAAGACCCCAGATTTTTCAAAACTACCAAATCTTGAGAAGCTCATTCTCAAAGATTGTCCAAGCTTGTATGAAGTACACCATTCAATTGGAGATCTAAGTAACCTCCTTCTTCTAAACATGAAGGATTGTACATGCCTAGGCAATCTTCCTATGGTAATCTATAAGTTAAAGTCATTACAAACTCTCATCCTTTCTGGTTGTTCAAATATTGACAAGTTAGAAGAAGACATAGGGCAGATGGAATCCTTAACAACTCTAATTGCAGACAATACTAGTCTAAAACAAGTGCCTTTTGCCATAGTAAGATCCAAACAGATTGGATATATATCCCTTTGTGGATATGAAGGATTGGCACGAGATGTATTTCCTTCTCTCATATGGACTTTGATGTCACATACAAGAGGAACTTTATCCTGTTTTCAACCATTTGGGATCATGCCAACATCTATAGTCTCCATGAATATACAGGATAATAATTTGGTTAACCTATTATCAAAAGTAGGTGAATTTTCAAAACTTCGAAGTATTTCTGTACAATGCGACTCAGATTTTCAACTAACTCAAGAACTAAGAACAATTCTCCATAAGTTATGCAATATAAACTCTTCTGAACCGGAAAGTGCATATCAATCACAAATTCCAGAAAATTCTATGGCATCGTATTTGATTGGAATGGGAAGCTACCAGCAAGTCTTCGATATGCTTAGCAATAGCATATCAAAGGTATTGAGAACCAATAGTTCTACTGATTTTGTGCTTCCAGGGGACAATTATCCTTATTGGTTAGCCTACACAGGGGAAGGTTATTCAGTACCTTTTCAAGTTCCTGAAGATAGTAATTGTCGCATGAAGGGAATGCTGTTGTGTGTTGTTTATTCATCAACCCTTGGAAACATGGCAACTCAAAATCTTACTAATGTCTTCATCTATAATTACACAAAGTGCACCATTCAGATATACAAGCAAGCAACAACAATGTTCTTTAGCGATGAAGATTGGCAGGGTGTAATATCAAATCTAGGACCCGGAGACAACGTGGAGATTTTTGTAGGTGTTGGTGATGGAATCACTGCTAAGAAAACAGCCGTGTATCTGATATATGGTCAGTCAATTACAATGAGAATGGAGTCACTTGGAATGGGTGCACAAGAATCACCTGAGCTGAGTGTGATTCTGTCACCTAAAATGAATGCACGATCAACCACTGATGTCGAAATGAAGGCGAAGAAACCGAAGAAAAAAATATTTTCAAAAATTGGAAGCATTGTTAGAGGTTGCATGATAGTGGAGATGAACTCCGATGCTCCAGTGATAGCGACACCTGGTGACACGGCGAAGGTTGATGGACGAACTCGATTTGGGGGTCTTGGAAATTATGGTTCTGATGTTGATGATGAAGACAATGAAATTGTTTGTGAAACTAATTTTGTGAATGCTCAAATCAAAACTATGTCTTTACCATCCAATGATTCTGTTTCTGATCAATTGCATGATGACAAGGGACACCAAGATATGAACTGCTTGGAAAGAGCATTGGAGGGAAAAAAGCAACAAATAATCATTCAGGTAGGGAAAGCAGAAGGGCCTGACAGGAATATACACGTCAGACAGAGAAACTACACTGAATCTTCTTGGTGTCTTGACGAGTTGGAAGCAATCATTGATTGCCACAAATTTCATGGCCACATAGTTTTGCCTATATTGTACCATGTTGTTCCATCCCAAGTTCGTCATCAAACTGGTGATTTTGGAAATGTTTTGAAAGCATTTGCACAGAAAAGATCATGGGATGAATATATGATGTCGAGGTGGAACACCGCATTCACCGGAGCAACAAATTTTTCCGGTTGGGATACGCCGTTTAAATCGTTAACGACAGACAGTCCAACTATGCAGAACAATGTTGATGTGGCATTTAACTGGCCACGTGGATTCCCTTCAGGCATAGTGAGGTAA 3864 0.3856 MSYTSSSSKSKLRWIYDAFISFRGEDTRKNFVSHLYSALANAGVNTFLDDEKLAKGQQLKTELFHAIEGSQISIVVFSENYISSRWCLDELVKIMECHASRGQVVLPVFYGVFPWFLRDLNDVTFEVILEKASDLHRVKQWKKALGEAAGFAGWDVSNYRNENFVVKEIVSEVLERLDRTYMSITDFPVGLECRVEHCIGLLRKETRGAYILGIWGMGGIGKTTIAKAIYNEIRYEFKHKSFLANIREVWQRDQGQIDLQERLLSDILKTEKVKVYSSDWGKAMIKETLCTKRVLVVLDDVNTLEQLSALCGNGNGIVQGSVIIITTRDVRLLNVLEVDHVYEVEEMNEIESLELFSWHTFKEANPPEGFLELSKQVVTYCGALPLALEVLGSYLYKRREKEWQSVLSKLKEIPNDKIQEKLKISYDGLTDHTEKDIFLDICCFFIGKDRGYVTEILNGCGLHAEIGITVLIERSLIKVEKNNKLGIHDLLRDMGREIVRQSSPLEPQKRSRLWVHDDVLDILTEHTGTGVIEGLALKMQXTSGVCFGTETFGKMKRLRLLKLDNVQVAGDYGHLPKQLRWVDWKAFSLTHIPENFYQENIVAIDLKYSYLKLVWKVPQFLERLKFLNLSHSKYLSKTPDFSKLPNLEKLILKDCPSLYEVHHSIGDLSNLLLLNMKDCTCLGNLPMVIYKLKSLQTLILSGCSNIDKLEEDIGQMESLTTLIADNTSLKQVPFAIVRSKQIGYISLCGYEGLARDVFPSLIWTLMSHTRGTLSCFQPFGIMPTSIVSMNIQDNNLVNLLSKVGEFSKLRSISVQCDSDFQLTQELRTILHKLCNINSSEPESAYQSQIPENSMASYLIGMGSYQQVFDMLSNSISKVLRTNSSTDFVLPGDNYPYWLAYTGEGYSVPFQVPEDSNCRMKGMLLCVVYSSTLGNMATQNLTNVFIYNYTKCTIQIYKQATTMFFSDEDWQGVISNLGPGDNVEIFVGVGDGITAKKTAVYLIYGQSITMRMESLGMGAQESPELSVILSPKMNARSTTDVEMKAKKPKKKIFSKIGSIVRGCMIVEMNSDAPVIATPGDTAKVDGRTRFGGLGNYGSDVDDEDNEIVCETNFVNAQIKTMSLPSNDSVSDQLHDDKGHQDMNCLERALEGKKQQIIIQVGKAEGPDRNIHVRQRNYTESSWCLDELEAIIDCHKFHGHIVLPILYHVVPSQVRHQTGDFGNVLKAFAQKRSWDEYMMSRWNTAFTGATNFSGWDTPFKSLTTDSPTMQNNVDVAFNWPRGFPSGIVR* 1288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0914 1287 Gene3D - 10 182 IPR035897 -
Vra9g0914 1287 Gene3D - 1162 1271 IPR035897 -
Vra9g0914 1287 SUPERFAMILY L domain-like 501 823 - -
Vra9g0914 1287 Pfam TIR domain 16 186 IPR000157 GO:0007165
Vra9g0914 1287 Pfam TIR domain 1171 1246 IPR000157 GO:0007165
Vra9g0914 1287 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1156 1255 IPR044974 GO:0006952
Vra9g0914 1287 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 19 1003 IPR044974 GO:0006952
Vra9g0914 1287 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 177 441 IPR027417 -
Vra9g0914 1287 SMART till_3 15 151 IPR000157 GO:0007165
Vra9g0914 1287 SMART till_3 1124 1250 IPR000157 GO:0007165
Vra9g0914 1287 Gene3D Ribonuclease Inhibitor 548 708 IPR032675 -
Vra9g0914 1287 Gene3D Ribonuclease Inhibitor 709 843 IPR032675 -
Vra9g0914 1287 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 19 1003 - -
Vra9g0914 1287 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1156 1255 - -
Vra9g0914 1287 Gene3D - 183 342 IPR027417 -
Vra9g0914 1287 ProSiteProfiles TIR domain profile. 14 177 IPR000157 GO:0007165
Vra9g0914 1287 SUPERFAMILY Toll/Interleukin receptor TIR domain 1166 1253 IPR035897 -
Vra9g0914 1287 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 154 IPR035897 -
Vra9g0914 1287 Pfam NB-ARC domain 195 419 IPR002182 GO:0043531
Vra9g0914 1287 PRINTS Disease resistance protein signature 211 226 - -
Vra9g0914 1287 PRINTS Disease resistance protein signature 288 302 - -
Vra9g0914 1287 PRINTS Disease resistance protein signature 381 395 - -
Vra9g0914 1287 PRINTS Disease resistance protein signature 690 706 - -
Vra9g0914 1287 Gene3D - 346 430 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0914 Vra-Chr9 10929804 10937882 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0914 16 759 WRKY Transcription Factor Family AT4G12020 30.662 7.64e-87 310
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0914 - - vra:106773318 2571.96