LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0913	ATGTCTTACACTTCATCATCCTCAAAATCTAAGCTCCGATGGATATACGATGTGTTCATCAGTTTCCGCGGGGAAGACACTCGTAAGAATTTCGTTTCTCATCTCTATTCCGCTCTTGCAAATGCCGGGGTCAACACTTTTCTGGACGATGAGAAGCTAGCCAAGGGACAACAGCTGAAAACAGAACTGTTTCATGCAATAGAAGGCTCTCAAATTTCCATTGTTGTTTTATCCGAAAACTACATTTACTCTACATGGTGTCTCGACGAACTAGTCAAAATCATGGAATGCCATGCTTTTAGAGGTCAAGTGGTTTTACCCGTGTTTTACGGCGTTTTCCCTAGGTTTCTACGTAACCTCAACGATGTTTCTTTCGAAGTTGGTGACCTCCACCGGGTGAAACAATGGAAGAAAGCGCTGGGCGAAGTAGCAGGTTTTGCAGGGTGGGATGTTTCAAATTACAGAAATGAAAACTTTGTTGTGAAGGAAATTGTTAGTGAAGTTTTGGAAAGACTAGATAGAACATACATGTCTATTACAGACTTTCCAGTTGGATTGGAATGTCGTGTGGAACATTGTATTGGCCTTCTAAGAAAGGAAACAAGAGGAGCTTATATATTAGGGATTTGGGGAATGGGAGGGATTGGTAAAACAACCATAGCCAAAGCCATCTACAATGAAATTCGATATGAATTTAAACATAAAAGTTTCCTAGCAAATATNAGAGAAGTTTGGCAAAGAGATCAAGGGCAGATTGATTTACAAGAACGACTTCTTTCAGATATCCTGAAAACAGAAAAGGTGAAGGTTTATAGCAGTGATTGGGGAAAAGCAATGATCAAGGAAACGCTTTGCACCAAAAGAGTACTTGTTGTACTCGATGATGTAAATACATTAGAACAATTAAGTGCACTATGTGGAAATGGTAATGGGATTGTTCAAGGAAGTGTAATAATCATTACAACAAGAGATGTACGTCTACTCAATGTTCTTGAAGTTGACCATGTATATGAAGTGGAGGAAATGAATGAGATTGAGTCCCTTGAGCTTTTCAGTTGGCATGCTTTTGAGGAAGCAAATCCACCAGAAGATTTCCTTGAACTCTCAAAACAAGTAGTCACTTACTGTGGAGCACTACCTCTAGCTCTTGAAGTTCTTGGATCTTATCTATATAAGAGAAAAGAAAAAGAGTGGCAAAGTGTATTATCAAAACTAAAAGAAATACCAAATGATAAAATACAAGAGAAGTTGAAAATAAGCTATGATGGTTTAAGCGATCATACGGAGAAGGACATATTCCTTGACATATGTTGCGGAACAGGAGTCATTGAGGGATTGGCTTTGAAGATGCAAAGAACCAGTGGAGTTTGTTTTGGTACTGAAACATTTGGGAATATGAAGAGACTGAGACTTTTGAAACTTGATAATGTACAAGTAGCTGGAGATTATGGGCATCTTCCCAAACAACTGAGATGGGTTGATTGGAAAGCATTTTCATTAACCCACATACCTGAAAACTTTTATCAGGAAAATATAGTTGCTATTGACTTAAAATACAGTTATCTTAAACTAGTATGGAAGGTGCCTCAGTTTCTGGAGAGGCTAAAATTTCTCAATCTTAGTCATTCCAAGTACTTATCAAAGACCCCAGATTTTTCAAAACTACCAAATCTTGAGAAGCTCATTCTCAAAGATTGTCCNAGCTTGTATGAAGTACACCATTCAATTGGAGATCTAANTAACCTCCTTCTTCTAAACNTGAAGNATTGTACATGCCTAGGCAATCTTCCTATGGTAATCTATAAGTTNAAGTCATTACAAACNCTCATCCTTTCTGGTTGTTCAAATATTGACAAGTTAGAAGAAGACATAGGGCAGATGGAATCCTTAACAACTCTAATTGCAGACAATACTAGTCTAAAACAAGTGCCTTTTGCCATAGTAAGATCCAAACAGATTGGATATATATCCCTTTGTGGATATGAAGGATTGGCACGAGATGTATTTCCTTCTCTCATATGGACTTTGATGTCACATACAAGAGGAACTTTATCCTGTTTTCAACCATTTGGGATCATGCCAACATCTATAGTCTCCATGAATATACAGGATAATAATTTGGTTAACCTATTATCAAAAGTAGGTGAATTTTCAAAACTTCGAAGTATTTCTGTACAATGCGACTCAGATTTTCAACTAACTCAAGAACTAAGAACAATTCTCCATAAGTTATGCAATATAAACTCTTCTGAACCGGAAAGTGCATATCAATCACAAATTCCAGAAAATTCTATGGCATCGTATTTGATTGGAATGGGAAGCTACCAGCAAGTCTTCGATATGCTTAGCAATAGCATATCAAAGGTATTGAGAACCAACAGTGGTACTGATTTTGTGCTTCCAGGGGACAATTATCCTTATTGGTTAGCCTATACAGGGGAAGGTTATTCAGTACCATTTCAAGTTCCTGAAGATAGTGATTGTCGCATGAAGGGAATGCTGTTGTGTGTTGTTTATTCATCAACCCCTGATAACATGGCAACTCAAAATCTTACTAATGTCTTCATCTTTAATTACACAAAGTGCACCATTCAGATATATAAGCAAGCAACAACAATGTTCTTTAGCGATGAAGACTGGCAGGGTGTAATATCAAATCTAGGACCCGGAGACAACGTGGAGATTTTTGTAGGTGTTGGTGATGGAATCACTGCTAAGAAAACAGCCGTGTATCTGATATATGGTCAGTCAATTACAATGAGAATGGAGTCACTTGGACTGAGTGCACAAGAATCACCTGAGCTGAGTGTGATTCTGTCACCTAAAATGAGTGCACAACCAACCACTGATGTAGAAATGAAGGCGAAGAAACCGAAGAAAAATATATTTGCAAAAATTAGAAACATTGTTAGAGTATGTTCATGTTTGGAGTAG	2934	0.3759	MSYTSSSSKSKLRWIYDVFISFRGEDTRKNFVSHLYSALANAGVNTFLDDEKLAKGQQLKTELFHAIEGSQISIVVLSENYIYSTWCLDELVKIMECHAFRGQVVLPVFYGVFPRFLRNLNDVSFEVGDLHRVKQWKKALGEVAGFAGWDVSNYRNENFVVKEIVSEVLERLDRTYMSITDFPVGLECRVEHCIGLLRKETRGAYILGIWGMGGIGKTTIAKAIYNEIRYEFKHKSFLANXREVWQRDQGQIDLQERLLSDILKTEKVKVYSSDWGKAMIKETLCTKRVLVVLDDVNTLEQLSALCGNGNGIVQGSVIIITTRDVRLLNVLEVDHVYEVEEMNEIESLELFSWHAFEEANPPEDFLELSKQVVTYCGALPLALEVLGSYLYKRKEKEWQSVLSKLKEIPNDKIQEKLKISYDGLSDHTEKDIFLDICCGTGVIEGLALKMQRTSGVCFGTETFGNMKRLRLLKLDNVQVAGDYGHLPKQLRWVDWKAFSLTHIPENFYQENIVAIDLKYSYLKLVWKVPQFLERLKFLNLSHSKYLSKTPDFSKLPNLEKLILKDCPSLYEVHHSIGDLXNLLLLNXKXCTCLGNLPMVIYKXKSLQTLILSGCSNIDKLEEDIGQMESLTTLIADNTSLKQVPFAIVRSKQIGYISLCGYEGLARDVFPSLIWTLMSHTRGTLSCFQPFGIMPTSIVSMNIQDNNLVNLLSKVGEFSKLRSISVQCDSDFQLTQELRTILHKLCNINSSEPESAYQSQIPENSMASYLIGMGSYQQVFDMLSNSISKVLRTNSGTDFVLPGDNYPYWLAYTGEGYSVPFQVPEDSDCRMKGMLLCVVYSSTPDNMATQNLTNVFIFNYTKCTIQIYKQATTMFFSDEDWQGVISNLGPGDNVEIFVGVGDGITAKKTAVYLIYGQSITMRMESLGLSAQESPELSVILSPKMSAQPTTDVEMKAKKPKKNIFAKIRNIVRVCSCLE*	978

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g0913	977	Gene3D	-	341	425	IPR042197	-
	Vra9g0913	977	PRINTS	Disease resistance protein signature	206	221	-	-
	Vra9g0913	977	PRINTS	Disease resistance protein signature	283	297	-	-
	Vra9g0913	977	PRINTS	Disease resistance protein signature	376	390	-	-
	Vra9g0913	977	PRINTS	Disease resistance protein signature	601	617	-	-
	Vra9g0913	977	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	441	913	IPR044974	GO:0006952
	Vra9g0913	977	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	19	439	IPR044974	GO:0006952
	Vra9g0913	977	Pfam	TIR domain	16	181	IPR000157	GO:0007165
	Vra9g0913	977	ProSiteProfiles	TIR domain profile.	14	172	IPR000157	GO:0007165
	Vra9g0913	977	Gene3D	Ribonuclease Inhibitor	444	768	IPR032675	-
	Vra9g0913	977	SMART	till_3	15	146	IPR000157	GO:0007165
	Vra9g0913	977	Pfam	NB-ARC domain	190	414	IPR002182	GO:0043531
	Vra9g0913	977	Gene3D	-	10	177	IPR035897	-
	Vra9g0913	977	SUPERFAMILY	L domain-like	448	734	-	-
	Vra9g0913	977	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	172	436	IPR027417	-
	Vra9g0913	977	SUPERFAMILY	Toll/Interleukin receptor TIR domain	5	149	IPR035897	-
	Vra9g0913	977	Gene3D	-	178	337	IPR027417	-
	Vra9g0913	977	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	441	913	-	-
	Vra9g0913	977	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	19	439	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0913	Vra-Chr9	10912251	10916701	Dispersed/Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0913	439	670	WRKY Transcription Factor Family	AT4G12020	31.227	1.31e-18	90.1

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0913	-		-	vra:106773317	1922.52