Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0912 ATGGGCTCATCGATTCCTTCCCAGGAATTTGCCTCTTCATCATCCAAACTCCCATGGATGTACGATGTGCTCATCAACTTTACCGGAGACAAAATCCGTAACAAATTTGTTTCCCATCTAGATTCTGCCCTTTCTAGTGTTGGATTTACCACTTTTCTTCACCACCACAATGCAGTGAAGCCAATGCACATCCAACAACAACAACCTATTCTGGATCTCTGTCGAGTAGCAATTGTTGTTTTCACCAAAACCTACTCTCAATCTGCTTGGTGTCTTTATGAACTTCAACAAATCATTGAATGGCACGAATTTTATTGCCGACATGTTTTGCCCGTATATTACGAAATTTCACCATCTGATGTACGTCTTCAGAAGGGTGATTTTGGAAAAGCCTTCGAAGCTACTGCATGTCAAACCTTTTCAAGACAACAACTCGAGCATGGGATATCCAGGTGGAGCCACGCACTCACCAAAGCAGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGCGATGCTGAACTAGTAGACAAAATTGTTAAGACTGTTCTTAATTTATCAGTCTTATCTGCTACTAAATTTCCAGTTGGATTACAACCCAAGGTACAAGATCTTNTTCGAACTATCAAANATAAATCCACGGAAGTTTGTACAATAGGGATATGTGGAATGGAAGGATCTGGTAAAACCACCCTTGCCAAAGCTATCTACCATCAAATTCATGGTACATTCACGGAGAAAAGTTTCATTGAAGTTACTCTAGAAGGTAAAGGAATAAGAAGTTGTGTTAGTTTACAAGAACAACTTCTTTCAGATGTCTTAAAAACAAAGGTGAAAATACCTGGAGATGAGATGGGAAGATGTATGATTCGAGAAAGACTTAATGGGAAAAGGGTGCTCATTGTACTTGACGATGTGAATCAGTATGGTCCATTAGACCTGTGGGAAACTAGTTCATGCTTCGGTGAAGGTACTGTAATAATCATTACAACAAGAGATGAATACCTACTTAGGAGACATCAAGCTGACTCTGTTTTTCGGATAAATCTAATGAACGAAAACGAGTCTCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACGATTACCTGGCAAGAAGAGTAATTTTTCATTGTAGAGGACTACCTCTGACTCTTGAAGTCATTGGAGCTTATTTATTTGAAACGAGCAGAAAAAAATGGGAAGTTGTATGGTATAAATTAGGGAAAATTCCGTATGACAATGTTCAACTGATATTAAAAATAAGCATTGATGGTTTACGCAATGAAATGGAAAAAGCTTTATTCCTTGATGTTTGTAGATTCTTTGTTGGTAAAAGCAAAGCTTATGTTACGAAGATCCTAGACGGCTGTAAAGTAGACGTTGATAATGGAATAAGAGTTTTGATAGAGCGTAACCTCATAAAACTTAAAAGAAACAATAAATTTGGAATGCATCATTTGCTACCAGGAATGGCAATGCAAATTGTTGCTCAAGAGCATCCATCATATGCACGGGAAGAGACTGATGTCTTTTGGAGATTTCCTGATAAACTGTTTTCAACCGGAAAAGATTGCTTCAAACCTTATCCTTTGGAGATAAGACACAAATCAAGAGTGCTGAAACTCGCTGGAAATCATGGGTACCTTCGGAATTCTTCAGAATTCGTAGCTTACGACTTTAATCTGTATGATGATGCAGTATCGATTGATTTAAGACACAGTTTGCTTGGACACGACTGGAAAAAACTGCAGGTTTTGGCGTGGCTAAAAGTCCTGAATCTTAGTCATTCCAAGTACTTAACAAAAACTCCTGACTTTTCGAGACTTCCAAGTCTTGAACAACTCATTCTCAAAGATTGCCCTAGATTGCGCCAATTACACCAATCTATTGGATGTCTTTGCAATCTTACACTGCTAAATTTGAAGGACTGCATATGTCTAAGCAATCTCCCGAGAAAGATATATATGTTGAAATCTTTAAAAACTCTCATTCTCTCTGGTTGTTCGAAGATTTATCTAATGGAAAAGGATATAGTCCAAATGGAATCCTTGATATCTCTAATTTCTGAAAATACAGCCATTAAACAAGTGCCTTTTTCAATTGTAAGCTCAAGAAACATTGGATATATATCTTTACATCGATTTGAGGGACTGTCACGTAATCTTTTTCATTTTATCATTCGGTCTCGGATGTCACTAACAATCAATCCCCTGTCTTATATTCATTCGTTCATGGATACGGAGGATAATAGTTGGGATGTTATCGCACCATTCTTTAGCAGCCTTGTAAATCTTCGAAGCGTTTTGGTTCACTGTGACCCCGAGTTTCAACTATCTCAGCAAGTGAAAACTATTCTGGTTGAATATGGCGTGAATATTACAGAATCAAGAATTTCAAAGCATTGCTTCAGGTCTTCTTTGGTTGGTGTTGGAAGATACAATGAATTCTTAAGTACTGTATTGGAAAGCAGTGAGTCAGGTGATGTTTCTCTTCCAAGTGACAATGATCCTTATTGGTTGGCCCATATAGGTGAGGGACATTCTGTTTCGTTCACTGTGCCTCAAGATCGTGTCATGAAGGGAATAGTTTTGTATGTTGTTTATTTATCAACCCCGGGAATCGTGACAACTGAATGTTTTACAAGTGTCTTAATTGTTAATTACACAAAGTCCACACTACTTATGCACAACCATGGCACAGTAATTTCCTTTAATGATGAAGATTGCCATGATATAATGTCAAATTTAGGATCAGGAGACAAGGTGGAGATTTTTGTGACTTTTGGTCATAGATTAATGGTCAAGAACACAGCTGTCTATTTGATATGTTGTGAATCACAAGACTTGGAAAGAGAGCCTGCGCTTAACAAAAATTCCCTCATTACATTCTTTAAGAAAATTGTAATGTGA 2934 0.3766 MGSSIPSQEFASSSSKLPWMYDVLINFTGDKIRNKFVSHLDSALSSVGFTTFLHHHNAVKPMHIQQQQPILDLCRVAIVVFTKTYSQSAWCLYELQQIIEWHEFYCRHVLPVYYEISPSDVRLQKGDFGKAFEATACQTFSRQQLEHGISRWSHALTKAANFFGWDESNYRSDAELVDKIVKTVLNLSVLSATKFPVGLQPKVQDLXRTIKXKSTEVCTIGICGMEGSGKTTLAKAIYHQIHGTFTEKSFIEVTLEGKGIRSCVSLQEQLLSDVLKTKVKIPGDEMGRCMIRERLNGKRVLIVLDDVNQYGPLDLWETSSCFGEGTVIIITTRDEYLLRRHQADSVFRINLMNENESLELLSWHAFREAKPKEEYDYLARRVIFHCRGLPLTLEVIGAYLFETSRKKWEVVWYKLGKIPYDNVQLILKISIDGLRNEMEKALFLDVCRFFVGKSKAYVTKILDGCKVDVDNGIRVLIERNLIKLKRNNKFGMHHLLPGMAMQIVAQEHPSYAREETDVFWRFPDKLFSTGKDCFKPYPLEIRHKSRVLKLAGNHGYLRNSSEFVAYDFNLYDDAVSIDLRHSLLGHDWKKLQVLAWLKVLNLSHSKYLTKTPDFSRLPSLEQLILKDCPRLRQLHQSIGCLCNLTLLNLKDCICLSNLPRKIYMLKSLKTLILSGCSKIYLMEKDIVQMESLISLISENTAIKQVPFSIVSSRNIGYISLHRFEGLSRNLFHFIIRSRMSLTINPLSYIHSFMDTEDNSWDVIAPFFSSLVNLRSVLVHCDPEFQLSQQVKTILVEYGVNITESRISKHCFRSSLVGVGRYNEFLSTVLESSESGDVSLPSDNDPYWLAHIGEGHSVSFTVPQDRVMKGIVLYVVYLSTPGIVTTECFTSVLIVNYTKSTLLMHNHGTVISFNDEDCHDIMSNLGSGDKVEIFVTFGHRLMVKNTAVYLICCESQDLEREPALNKNSLITFFKKIVM* 978
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0912 977 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 561 950 IPR044974 GO:0006952
Vra9g0912 977 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 520 IPR044974 GO:0006952
Vra9g0912 977 Pfam TIR domain 21 185 IPR000157 GO:0007165
Vra9g0912 977 ProSiteProfiles TIR domain profile. 19 188 IPR000157 GO:0007165
Vra9g0912 977 CDD AAA 222 351 - -
Vra9g0912 977 SUPERFAMILY L domain-like 544 777 - -
Vra9g0912 977 SMART till_3 20 162 IPR000157 GO:0007165
Vra9g0912 977 Gene3D Ribonuclease Inhibitor 540 807 IPR032675 -
Vra9g0912 977 SMART AAA_5 216 357 IPR003593 -
Vra9g0912 977 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 165 IPR035897 -
Vra9g0912 977 Pfam NB-ARC domain 212 432 IPR002182 GO:0043531
Vra9g0912 977 Gene3D - 352 442 IPR042197 -
Vra9g0912 977 PRINTS Disease resistance protein signature 219 234 - -
Vra9g0912 977 PRINTS Disease resistance protein signature 294 308 - -
Vra9g0912 977 PRINTS Disease resistance protein signature 386 400 - -
Vra9g0912 977 PRINTS Disease resistance protein signature 663 679 - -
Vra9g0912 977 SUPERFAMILY "Winged helix" DNA-binding domain 422 514 IPR036390 -
Vra9g0912 977 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 561 950 - -
Vra9g0912 977 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 26 520 - -
Vra9g0912 977 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 179 445 IPR027417 -
Vra9g0912 977 Gene3D - 185 348 IPR027417 -
Vra9g0912 977 Gene3D - 13 184 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0912 Vra-Chr9 10904594 10908183 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0912 6 769 WRKY Transcription Factor Family AT4G12020 27.251 2.71e-46 179
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0912 - - vun:114165123 1216.83