Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0910 ATGACGTCAGCAATTCCTTCCATGGAATTCGCCTCTTCAACTACCGTACTCCCACAGAAGTACGATGTGCTCATCAACTTCAACGGAGAAGACATCGGCAGGAAATTTGTTTCGCATCTCGATTCCGTCCTTTCTGCTATTGGACTTACCACTTTCCTTCACCACGACAATGGAGAAAAGTCAATGAACGAACCTCTTCTCAATCTGTATCGGGTAGCAATAGTTGTTTTCACCAAAACCTATTCCCAATCTCCTTGGTGTCTTCATCAGCTTCAACAAATCATTCAATGGCATCAAACTTATTCCCGACATGTTCTGCCCGTATATTACGAAATTCAGCCATTTGATGTACGCTTTCAAAAGGGTGATTTTGGAAAAGCATTCAAAAGAGCTGCACACCAAACTTTCTCACGACAAGAACTGGAGCATGGCATGTCCAAGTGGAGCCACGCACTCACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATTACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCGTTCTTAATTTACCAGTATTGTCTGCTACTAAATTTCCAGTTGGATTACAATCTAACGTGGAAGATCTAATTCGAACTATAAAAGATAAATCCAGCGAAGTTTGTATAATAGGGATAACTGGAGCTGGAGGATCTGGGAAAACCACCCTTGCCAAAGCCATCTACAATAAAATTCATGAAACATTCACGGAGAAAAGTTTCATCGAAGATATTGGACAAGTTCGTCGAACAAGAGGGCATCATCGTTTACAAGAACAATTTCTTTTAGATGTCCTAAAAACAAAGGTGGAGATACCTAGTGTTGATATGGGAACAAGAATGATTCGGGAAGGACTTACGGGGAAAAGGGTGTTAATTGTACTTGACGATGTGACTGAGAATTTTACATTGTTAGATCTATGGGGATGCCGTGAATGGTTCGGTGGAGGAACAGTAATAATCATTACAACAAGAGATGTAGACCTACCCAGGATTCTTAAAGTTGATTCTGTTTTTGGGATAAGGCTAATGAACGAGAACGAATCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAAGCAAAACCAAAAGAAGAATACAATTACCTTGCAAAAGGTGTAGTTACTCATTGTGGAGGACTACCTTTAGCTCTTGAAGTCATTGGAAATTGTTTATTTAAAAGGACAAAAGAAGAATGGAATAGTGTACTGTTAAAATTAGAGAAAATTCCCCTGCACAATGTTCAACAGAAATTGAAAATAAGCTTTGACGGATTACGGAATCAAATTGAAAAAAATTTATTCCTTGATATATGTTGTTCCTTTGTTGGTGAGGGCAGAGCCTATGTTAAGAAGATGCTAAACGGATGTGGAGTAGACGCTGATAGTGGAATAAGAGTTCTTATAGAATGTAGTCTCATAAAAGTTAAAAGGAACAGCAAACTTGGAATGCATCCTTTGTTACAAGAAATGGGAAGAGAAATTATTAATGAAATTTATGAAGAGGAATTTGAGACGGAGTGGCTATTGCGGTTTGATGATGTACAATATGTATTGACAGATAATACAGGGAGAAGAGCCATTGAGCGAGTGCCTGTAAAATTACGTTCAGTGAAAAGAGAACCATCAAGAATTTTGAAACACACTGAAAATTCTGATTACATTTCTAAGAAACTGAGGTGGATCAGTTTGGATTGGTTTTCTTCAGTACCTGACAAGTTTTATCTGCATGATGCAATGACGATTCATTTAAAACATAGTTCTCTTCGATTCCTCTTGAAAGAACCCCAGGAATTGAGCTGGTTGAAGGTCCTTAATCTTAGTCACTCGAAGTATTTAACAGGAACCCCTGACTTTTCTGGACTACCAAGTCTTGAACAACTCATTCTCAAGGGTTGTACAGGATTACGTGAAGTCCACCCATCTATTGGATGTCTCTGCAATCTTACATTGTTAAATTTGAAGGACTGTACAAGTCTAAGCAATTTCCCTAGAGAGATATATAAATTGATATCTTTAGAAACTCTCATTCTCTCTGGGTGTTCGAAGATTGACCTATTGGAAAGAGATGTAGTGCGAATGGAATCCCTGATAACTCTAATTGCTGAAAATACAATTGTGAAACATGTCCCTTTTTCGATTGGAAGCTCGAAAAGCATTGGACATATATCCTTACAAGGATTTGAGAGATTGTCATGTAATATTTTTCCTTCTATCATTCGGTCTTGGATGTCGCCAGTAATGAATCCCATATCTTATATTCATTCGCTGTGCATGGATATCGATAATAGTTGGGAAAGTATTGGACCATTGCTTAGCAGCCTGGTAAATCTTCGAAGTGTTTTGGTGCAATGTGACACCGAATATCAACTATCTAAGCAAGTAAAAAGTATTCTGGTTGAATATTTCGCAAATTCTGCAGAATCAGGAATTTCAAAGCAGCAATTCAGGTCTTCTTTTATAGGTCTTGGCACATACCATGAATTCTTCAATGCGGTCAGCGATAACATCTCTGAGGTATTGTTAAATAGTGACTCTTGTGATGTCTCTCTTCCAGTTGATAACCTTCCTAATTGGTTGGCCTATATGGGTGAGGGAAATTCTGTTTCTTTCTCTGTGCCTTGGGATCGGGACATGAAAGGAATGGCTTTGAGTGTTGTTCATTTATCAACTGGTGAGATCGTGGCAACTGAATGTCTTAGAAGTGTCTTAATAGTTAATTACACAAAGTGCACATTGCAAATACACAAGTATGGCACAATAATTTCCTTTAATGATATAGATTGGCAGGGTATAATGTCAAATTTGGGACCTGAAGACAGGGTGGAGATTTTTGTTACTTTTGGTCATGGATTGGTGGTAAAGAACACAATACTCTATCTTATATGTGGTGAATCAAATTATTTGAAAAAAGAGCCAGAGTCAGAGAAAAATTATCTCCTTAGATTTATAATGAAAATTGTAATGTGTGACTTCTGGTAA 2997 0.3804 MTSAIPSMEFASSTTVLPQKYDVLINFNGEDIGRKFVSHLDSVLSAIGLTTFLHHDNGEKSMNEPLLNLYRVAIVVFTKTYSQSPWCLHQLQQIIQWHQTYSRHVLPVYYEIQPFDVRFQKGDFGKAFKRAAHQTFSRQELEHGMSKWSHALTKAANFFGWDESNYRSDAELVDKIVKSVLNLPVLSATKFPVGLQSNVEDLIRTIKDKSSEVCIIGITGAGGSGKTTLAKAIYNKIHETFTEKSFIEDIGQVRRTRGHHRLQEQFLLDVLKTKVEIPSVDMGTRMIREGLTGKRVLIVLDDVTENFTLLDLWGCREWFGGGTVIIITTRDVDLPRILKVDSVFGIRLMNENESLELLSWHAFREAKPKEEYNYLAKGVVTHCGGLPLALEVIGNCLFKRTKEEWNSVLLKLEKIPLHNVQQKLKISFDGLRNQIEKNLFLDICCSFVGEGRAYVKKMLNGCGVDADSGIRVLIECSLIKVKRNSKLGMHPLLQEMGREIINEIYEEEFETEWLLRFDDVQYVLTDNTGRRAIERVPVKLRSVKREPSRILKHTENSDYISKKLRWISLDWFSSVPDKFYLHDAMTIHLKHSSLRFLLKEPQELSWLKVLNLSHSKYLTGTPDFSGLPSLEQLILKGCTGLREVHPSIGCLCNLTLLNLKDCTSLSNFPREIYKLISLETLILSGCSKIDLLERDVVRMESLITLIAENTIVKHVPFSIGSSKSIGHISLQGFERLSCNIFPSIIRSWMSPVMNPISYIHSLCMDIDNSWESIGPLLSSLVNLRSVLVQCDTEYQLSKQVKSILVEYFANSAESGISKQQFRSSFIGLGTYHEFFNAVSDNISEVLLNSDSCDVSLPVDNLPNWLAYMGEGNSVSFSVPWDRDMKGMALSVVHLSTGEIVATECLRSVLIVNYTKCTLQIHKYGTIISFNDIDWQGIMSNLGPEDRVEIFVTFGHGLVVKNTILYLICGESNYLKKEPESEKNYLLRFIMKIVMCDFW* 999
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0910 998 SMART till_3 20 158 IPR000157 GO:0007165
Vra9g0910 998 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 175 443 IPR027417 -
Vra9g0910 998 Gene3D - 348 432 IPR042197 -
Vra9g0910 998 Gene3D - 16 179 IPR035897 -
Vra9g0910 998 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 24 967 - -
Vra9g0910 998 ProSiteProfiles TIR domain profile. 19 184 IPR000157 GO:0007165
Vra9g0910 998 SUPERFAMILY Toll/Interleukin receptor TIR domain 12 161 IPR035897 -
Vra9g0910 998 Gene3D - 180 342 IPR027417 -
Vra9g0910 998 SUPERFAMILY "Winged helix" DNA-binding domain 420 503 IPR036390 -
Vra9g0910 998 SUPERFAMILY L domain-like 561 785 - -
Vra9g0910 998 Pfam TIR domain 20 185 IPR000157 GO:0007165
Vra9g0910 998 PRINTS Disease resistance protein signature 215 230 - -
Vra9g0910 998 PRINTS Disease resistance protein signature 290 304 - -
Vra9g0910 998 PRINTS Disease resistance protein signature 383 397 - -
Vra9g0910 998 PRINTS Disease resistance protein signature 602 618 - -
Vra9g0910 998 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 24 967 IPR044974 GO:0006952
Vra9g0910 998 Pfam NB-ARC domain 197 425 IPR002182 GO:0043531
Vra9g0910 998 Gene3D Ribonuclease Inhibitor 547 696 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0910 Vra-Chr9 10884157 10888036 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0910 6 762 WRKY Transcription Factor Family AT4G12020 27.515 1.02e-62 231
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0910 - - vun:114165880 1264.98