Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0905 ATGTCTTCTTCTTCATCATCACAACCCCAATGGATCTACGACGTCTTCATCAACTTCAGGGGAGGAGACACTCGCAGAGACTTCGTTTCGCATCTCTACTGCGCCCTCTCCAACGCCGGCGTCAACACTTTCTTCGACGACGAGAATCTGCTCAAGGGAACGCCGCTGGAGGAGCTAACGCGAGCGATCGAAGCCTCTCAGATTGCGATCGTCGTTTTCTCCGAAACCTACACCGAATCCACCTGGTGTCTCACCGAGCTTCAGAAAATAATCGATTGCAACGAATCCTACGGCCAAATCGTTGTGCCCATATTCCACGGCGTCGAACCGTCCATTCTACGCAATCCCAAAGGTCGCTTTCGTGAGGCTTTGGAAGCTGCTGCGAAGAAAAAGTTTTCCGAAGAGCATAGGGAGTATGGGTTGTCGAGATGGAAAAACGTGCTCAAGAAAGCTGCAAATTTCTCTGGTTGGGATGTGAAGAATCACAGGAATACAGCTAAACTAGTGAAGGACATTGTTGAGGACATACTGACAAAACTAGACTACGCACTCTTGTCTATAACTGAATTTCCTGTTGGATTGGAGTCCCGTGTGCAAGAAGTGGTTGGAATTATAGAAAATCAATCCGCCAAGGTCTGCACCATAGGAATTTGGGGAATGGGTGGATCGGGCAAAACTACCATGGCCAAAGCCATCTACAATCAAATTCATCGTAGATTCAATGATAAGAGTTTCATTGAAAATATTAGGGAAGTTAGTGAAACATATGGAAGAGGGCATGTTCACTTACAAGAAAAACTTCTTTCAGATGTCCTAAAAACAAAGGTCAAGATACATAGTGTTGGGATGGGAACAACTGTCATCGAGAACAGACTTTCTAAAAAGAAGGTGTTCATTGTACTTGACGATGTGAATGACTTTGGCCAATTAAAAGATCTATGTGGAAATCGTAAATGGTTTGGTAAGGAAAGTGTAATAATCATTACAACTAGAGATCTACATCTACTTGACCTACTTAAAGTTGATTATGTTTATAAAATGGAGGAAATGGACAAAAATGAGTCCCTTGAGCTTTTTAGTTGGCATGCTTTCAGAGAAGCGAAACCAAGAGAAGACTTTGATGAGCTCGCAAGAAATGTAGTTGCTTATTGTGCAGGTCTACCACTAGCTCTTGAAGTCCTTGGGTCTTATTTAATAGAGAGGACAAAGAAAGATTGGGAAAGTGTATTGTTAAAACTAGAAAAAATTCCCAATGATCAAGTTCAAGAGAAATTAAGAATAAGCTTTGATGGTTTATGTGATGACATGGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTATTGGTAAAGACAAAGCCGATGTTATAGAGATACTGAATGGTTGTGGGCTACATGCTGACATTGGAATAACAGTTCTTATTGAGCGTAGTCTCTTAAAAGTTGAAAAGGACAACAAACTTGGAATGCATCAATTGCTACGGGACATGGGAAGAGAGATAATTTGTGAGAGTTCAAGAAAGGATCCTGGGAAGCGGAGTCGATTGTGGTTTCATGAGGATGTACTTGACGTGTTGACAAAGAATACAGGAACTGAAACTATTGAGGGATTGGCTCTGAAATTGCATTTCATCGGCAAAGATTGCTTCAAAGCTTATGCTTTTGAGGAAATGAAGAAATTGAGACTGTTGCAACTTGATCATGTACAGCTTACTGGAAATTATGGTTATCTTTCTAAGCAACTTAGGTGGGTTTGTTGGAAAGGATTTCCTTCAAAATATATACCTAAAAAATTTTTTCTGGAAGGTGCAGTTGTGATTGATTTAAAACACAGTAATCTTCAACTTTTCTGGAAAGAACCTCAGATTTTGAGGTGGCTAAAAATCCTCAATCTTAGTCACTCCAAGTACTTGACTCTAACTCCTGACTTTTCCAAACTACCAAATCTTGAAAAGCTTATTCTCAAAGATTGCCCACGTTTGTGCAAGGTACACGAGTCCATAGGAGGTCTCCGCAATCTTCTACTGATAAATTTAGAAGACTGTAAAAGTCTTGGCAATCTGCCAAGGGGAGTTTATAAGTTGAAATCTGTAAAAACTCTCATCCTTTCAGGTTGTTTGAAGATTGACAAATTAGAAGAAGATATAGTGCAGATGGAATCCTTGCAAACACTAATTGCTGAAAATACTGCTATGAAACAAGTGCCCTTTTCAATAGTAAAGACAAAAAGCATTGTTTATATATCGCTATGTGGATTTGAAGGATTTTCGCGTAATGTTTTCCCTTCTATCATTCGATCTTGGATGTCACCAACAATGAATCCCTTATCTTATGTTCATCCATTTTGTAGCACATCGTCATATCTAGTTTCCATGGACATGCAAAGTTATAATTTGGGTGACCTTGAACCAATGCTTAGCAGCCTCTCAAATCTACGAAGTGTTTTGGTTCAATGTGACACAGAGTCTCAAGTTTCTATGCAAATAAGGGCACTTTTGGGCAACAGTGTAAATTTTACACAAGTCGAAATAGCATCTCAAATATCAAAGCATTACCTTAGGTCTTATTTGATTGGAATTGGAAATTATCAAGAAGTCTTCAATATTCTAAGCGCTAGCATATCTGAGGGATTGGCATCCAGCGAGTCTTGTGATGCTTTTCAACCAGGTGACAATGATCCTTTTTGGTTGGCCCGTACGGGTGAGGGAAATTCAGTGTATTTCACTGTGCCTGAGGATCGTCGCATGAAAGGAATGACTTTGTGTGTAGTTTATTTATCAGCCCCTGAAATCACAGCAACCGAATATCTTATTAGTGTTTTAATGGTTAACTACACAAGGTACACTATCCAGGTATTCAAGCGAGAGACGGTATTTTCCTTTAATGATGTAGATTGGCAGGGCATTATATCACATTCAGGCCCTGGAGACAAGGTGGAGATTTTTGTGAATTTTGGCCATGGATTGGAGGTCAAGAAGACAGTTATCTATCTAATGTGTGATGAATCAATTGATAAGGAAGTCAAACCTTCTCCTGAGCCAAAGAAGGAACCAAAGAAAAACGTCTTTGAAAGATTTATAAAGAAAATTTTAACATAA 3099 0.3943 MSSSSSSQPQWIYDVFINFRGGDTRRDFVSHLYCALSNAGVNTFFDDENLLKGTPLEELTRAIEASQIAIVVFSETYTESTWCLTELQKIIDCNESYGQIVVPIFHGVEPSILRNPKGRFREALEAAAKKKFSEEHREYGLSRWKNVLKKAANFSGWDVKNHRNTAKLVKDIVEDILTKLDYALLSITEFPVGLESRVQEVVGIIENQSAKVCTIGIWGMGGSGKTTMAKAIYNQIHRRFNDKSFIENIREVSETYGRGHVHLQEKLLSDVLKTKVKIHSVGMGTTVIENRLSKKKVFIVLDDVNDFGQLKDLCGNRKWFGKESVIIITTRDLHLLDLLKVDYVYKMEEMDKNESLELFSWHAFREAKPREDFDELARNVVAYCAGLPLALEVLGSYLIERTKKDWESVLLKLEKIPNDQVQEKLRISFDGLCDDMEKDIFLDVCCFFIGKDKADVIEILNGCGLHADIGITVLIERSLLKVEKDNKLGMHQLLRDMGREIICESSRKDPGKRSRLWFHEDVLDVLTKNTGTETIEGLALKLHFIGKDCFKAYAFEEMKKLRLLQLDHVQLTGNYGYLSKQLRWVCWKGFPSKYIPKKFFLEGAVVIDLKHSNLQLFWKEPQILRWLKILNLSHSKYLTLTPDFSKLPNLEKLILKDCPRLCKVHESIGGLRNLLLINLEDCKSLGNLPRGVYKLKSVKTLILSGCLKIDKLEEDIVQMESLQTLIAENTAMKQVPFSIVKTKSIVYISLCGFEGFSRNVFPSIIRSWMSPTMNPLSYVHPFCSTSSYLVSMDMQSYNLGDLEPMLSSLSNLRSVLVQCDTESQVSMQIRALLGNSVNFTQVEIASQISKHYLRSYLIGIGNYQEVFNILSASISEGLASSESCDAFQPGDNDPFWLARTGEGNSVYFTVPEDRRMKGMTLCVVYLSAPEITATEYLISVLMVNYTRYTIQVFKRETVFSFNDVDWQGIISHSGPGDKVEIFVNFGHGLEVKKTVIYLMCDESIDKEVKPSPEPKKEPKKNVFERFIKKILT* 1033
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0905 1032 Gene3D - 181 344 IPR027417 -
Vra9g0905 1032 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 16 999 - -
Vra9g0905 1032 Gene3D - 5 180 IPR035897 -
Vra9g0905 1032 Gene3D - 349 433 IPR042197 -
Vra9g0905 1032 SUPERFAMILY Toll/Interleukin receptor TIR domain 2 157 IPR035897 -
Vra9g0905 1032 ProSiteProfiles TIR domain profile. 11 180 IPR000157 GO:0007165
Vra9g0905 1032 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 16 999 IPR044974 GO:0006952
Vra9g0905 1032 CDD AAA 192 333 - -
Vra9g0905 1032 SMART till_3 12 154 IPR000157 GO:0007165
Vra9g0905 1032 Pfam TIR domain 13 183 IPR000157 GO:0007165
Vra9g0905 1032 Gene3D Ribonuclease Inhibitor 546 866 IPR032675 -
Vra9g0905 1032 Pfam NB-ARC domain 197 417 IPR002182 GO:0043531
Vra9g0905 1032 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 184 443 IPR027417 -
Vra9g0905 1032 PRINTS Disease resistance protein signature 214 229 - -
Vra9g0905 1032 PRINTS Disease resistance protein signature 291 305 - -
Vra9g0905 1032 PRINTS Disease resistance protein signature 384 398 - -
Vra9g0905 1032 PRINTS Disease resistance protein signature 669 685 - -
Vra9g0905 1032 SUPERFAMILY L domain-like 490 816 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0905 Vra-Chr9 10852032 10859708 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0905 13 793 WRKY Transcription Factor Family AT4G12020 29.056 3.83e-79 282
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0905 - - gmx:100815297 1687.55