Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0903 ATGGAAAATCAGTTCTTTATCAATTCTGGGGTGTCACAAACACAGCATCCCCTTCACTTTGAACCTTCACCACCACCTCCACCTTCTTCTTCTTCAGTGCCCTCTTGGCAATCACTCTCACCCACCATGGGAATTCAACCAACACTTCTCAATTGTGCCTCTGAGCAGACCCAGGATTGCTTTTACAACCCCAATTGGGAAAAATCAACAGATCATGCACTTCACTTTGATTCCTCAGCACTCAGTTCAATGGTCTCCTCTCCTGCAGCATCATCCAACCCCAGCAGCAACATCTCCAATGATAATTTCATCATCAGGGAATTGGTCGGGAGATTGGGAGCTATTGGGAGTTCTGATGAGATCCCACAACACTCTCCTCACCCTTTGGTTGTGGCCTCTTCTTACATGAATAATGGCAGTGGCAGCCCCAATACTTCTTGTTACACCACCCCTTTGAGTTCCCCTCCAAAGGTCAAGACTGTGCAGAGCTTGGTGAATGAGAGGTTGGCAAATTTCGGAGGAAAGTCAATGACTTTGAATTCCAGTGTCGCCGAATTCTCTGCTGACCCTGGTTTCGCTGAGAGGGCTGCAAAGTTTTCTTGCTTTGGCAGCAGGAGTTTCAATGGCAGGAACGTCCAATTGGGGGTGAACAATGGTGAATTGGCTCAAAGATCTGCATCAGCGGTGGAAAATGGTGGAAAGTTATCTAGAATCTCAAGTAGTCCTCTGCTCAAAACACTCGGATCTCAAATGGGTACCCCAGAGAACAAGAATTCAGCAATTCAGGACCAGGAGAAAGTTGAGGTTGCCAATTCTCAAGAGGAATCTACCATATCTGAGCAAACACCAAATGGAGAAATTGGGATGAAAAATTGCCAAGATATGACGAATTCCAGGAAAAGAAAAGCATCTTCCAAAGGAAAAACCAGAGAAACTTCTAACTCCATCAAGGGCGTTGAAGTCAGTGAGGATTCAAATTCAAAGCGAACCAAGCCAAACGAGGGTGAGGGAAACGAAAATGGACAGGTGAAGGTTGAGGAAGAGTCCAAAGCAGTGGAAGAGAAACAGAACAAAAGCAACTCAAAACCTCCTGAGCCACCAAAAGATTACATTCATGTGAGAGCAAGAAGAGGCCAAGCCACTGACAGTCATAGTCTTGCAGAACGTGTACGGAGGGAGAAAATCAGTGAGAGGATGAAGCTGCTCCAAGATCTTGTACCAGGTTGCAACAAGGTCACTGGAAAAGCACTTATGCTAGATGAAATTATAAATTATGTTCAGTCATTGCAGCGTCAAGTTGAGTTCCTATCTATGAAGTTGGCCTCTGTTAACACAAGGATGGATCTTAGTATTGACAGCCTTGTTTCAAAAGATGTATTTCAATCTAATAATTCTTTGGCAACACACCCAAATCCAACATTCCCTCTAGATTCCTCAGCACAAGCCTTTTATGGGCACCAGCATCAGCAAAACCCAGTTATCCATAATAACATACCTAACAGAACGGTGACCCACTGCTCAGTGGACCCATTAGACACATCTTTGTGCCAAAATCTTGCAATGCAATTACCCCCCCTAAATGGGTTTAATGAAGTTGCCTCTCAGTTTCCATTAACATTCTGTGAGGAGGATCTGCACACCATTGTGCAGATGGGGTTTGGGCAAACTGCAAACTGGAAAACACCAATCCAATCCCCAAGTTTCAACGGTTCAAATAATGTACCCCAGATGAAAGTTGAGCTCTGA 1746 0.4462 MENQFFINSGVSQTQHPLHFEPSPPPPPSSSSVPSWQSLSPTMGIQPTLLNCASEQTQDCFYNPNWEKSTDHALHFDSSALSSMVSSPAASSNPSSNISNDNFIIRELVGRLGAIGSSDEIPQHSPHPLVVASSYMNNGSGSPNTSCYTTPLSSPPKVKTVQSLVNERLANFGGKSMTLNSSVAEFSADPGFAERAAKFSCFGSRSFNGRNVQLGVNNGELAQRSASAVENGGKLSRISSSPLLKTLGSQMGTPENKNSAIQDQEKVEVANSQEESTISEQTPNGEIGMKNCQDMTNSRKRKASSKGKTRETSNSIKGVEVSEDSNSKRTKPNEGEGNENGQVKVEEESKAVEEKQNKSNSKPPEPPKDYIHVRARRGQATDSHSLAERVRREKISERMKLLQDLVPGCNKVTGKALMLDEIINYVQSLQRQVEFLSMKLASVNTRMDLSIDSLVSKDVFQSNNSLATHPNPTFPLDSSAQAFYGHQHQQNPVIHNNIPNRTVTHCSVDPLDTSLCQNLAMQLPPLNGFNEVASQFPLTFCEEDLHTIVQMGFGQTANWKTPIQSPSFNGSNNVPQMKVEL* 582
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0903 581 CDD bHLH_AtBPE_like 369 454 - -
Vra9g0903 581 Coils Coil 426 446 - -
Vra9g0903 581 MobiDBLite consensus disorder prediction 246 294 - -
Vra9g0903 581 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 377 448 IPR036638 GO:0046983
Vra9g0903 581 Coils Coil 338 358 - -
Vra9g0903 581 MobiDBLite consensus disorder prediction 322 370 - -
Vra9g0903 581 MobiDBLite consensus disorder prediction 246 370 - -
Vra9g0903 581 PANTHER BHLH TRANSCRIPTION FACTOR 2 574 - -
Vra9g0903 581 MobiDBLite consensus disorder prediction 13 38 - -
Vra9g0903 581 Gene3D - 376 451 IPR036638 GO:0046983
Vra9g0903 581 Pfam Helix-loop-helix DNA-binding domain 383 430 IPR011598 GO:0046983
Vra9g0903 581 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 379 429 IPR011598 GO:0046983
Vra9g0903 581 SMART finulus 385 435 IPR011598 GO:0046983
Vra9g0903 581 PANTHER STEROL REGULATORY ELEMENT-BINDING PROTEIN 2 574 IPR024097 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0903 Vra-Chr9 10794328 10797840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0903 1 540 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G07340 42.936 1.82e-108 330
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra9g0903 HLH 4.7e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0903 - - gmx:100801233 892.493