LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vra9g0901	ATGACAATATATTTCAATGTTTCGTGCATTCATGAAAAACTGGATTTGCAGCAATATGAAGGGCATAATTGTTATCACAGACTAAGACTGCTGGTTGTTGAAAAGTTACGTGAAGATCCTGTAGAAGAAAAGTTAACCATTGAATTTCGTAAAGCCAAGATATATAGAGTAACCAATTCTGCCCTCTCTACTGTTCCTCTCACCACTTTCCTTCTTTACCCCAATGCAGTGAAGTCAACACACATCCAAGAACCTATTCTCAGCCACTGTCGTGTAACAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTCATCAGCTTCAACAAATCATCGACTGGCACGAAACTTATTGCCGACATGTTCTGCCTGTATATTATGAAATCCAGCCATCTGATGTACGTTTTCAGAAGGGTGACTTTGGAAAAGCCTTGAAGGCAACTGCTCAACAAACATTTTCAGGACAAGAACTTGAGCATGGAATGTCCAGGTGGAGCCATGCACTCACCAAAGCTGCAAATTTGTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAGTTAGTGGACAAAATTGTTAAGAGCGTTGTTAATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTGCAATCCCATGTGGAAGATCTGATTCGAACTATCAAAAATAAATCCACTGAAGTTTGTATAATAGAGATAAGTGGAGAAGAAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCATTGGAAATTCAAGGACAAAAGTTTCATTGAAAATATTTCACATGTTAGCGGAACAAGAGGGCTTCTTCGTTTACAAGAACAACTTCTTTTAGATGTCCTAAAACAAGAGGTGGAGATTCCTAGCGTTGATGTGGGAAAAACTATGATTCGGGAAAGACTTTTAGGAAAAAGGGTTTTGATTGTACTTGACGATGTTAATTACTCTAATAATTTATTCGACCTAAGGGATTGTCTTAAATTATTAGTTGAAGGAACTGTTATAATAGTTACATCAACATATGGAATACATATAAGTGATCAAGCTAATTCTGACTTTTGGGTAGAGCGAATGAACGAAGAAGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCGAAAGAAGAATACGAAGACCTTGCAAGAAGAGTAGTTAGTTATTGTGGAGGATTACCTCTAGCTCTTGAAGTCGTTGGAAGTACTTTGTTTGAAAAGACCAAAAAAGAATGGAACAGTTCATTGTTTGCGATAGATGGCTTGCTTCCTGATCCAGAGATAATAAAACTAAGCATCGAAGGTTCACTGAATGAAATGGAAAAAGATATATTCCTTGATATATGTTGTTTCTTTATTGGTAAGAGCAGAGCCTATGTTACGAAGATCCTAAATGGCTGTGGAGTAGACGCTGATAATGGAATAAGAGTTCTCATCGAGCGTANCCTCATCAAAATTAACAAGAACAACAAATTAGGAATGCATCCTTTGCTACAAGAGATCGGAATAAGAATTATTCAGAAAAATTCAGGAAAGGATCTTGGGAAGAACAGGCGACTGTGGTTTGATAAGGATACGAAATATGGGACAGAAGCCAAGCAGTGGTTGCCTGTGAAACAGCCTTCAGTTTTCACTCCCTTCGAAAGTGTACAACCGACTGTAAATTCTGAGTACCTTCTTAAGAAACTAAGATGGATCAGTTCGCATGGACTTTCTTCAGAACGTCTACCTAACAACTTTTATCAGCATGATGTAATAGCTATTGATTTAAAACGCAGTCTTCTTCGATTTCTCTGGAAAACACCCCAGGTTATGACATCACTAAAAGTCCTTAACCTCAGTCACTCCAAGCATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAACATCTCATTTTGAAATATTGTTCGAGATTGAGCAAAGTGCACCAATCTATTGGATCACTCAACAGTCTTATACTGCTAAATTTGAAAGACTGTACAAGTCTAAACAATCTTCCAACAGAGATATATGAGTTGAAATCTTTAAGAACCTTCATTCTCTCTGGTTGTTCCAAGATTCACATAATGGATAAAGATATAGCAAAGTTGGGATCCTTGATAACTCTAATTGCTGAAAATACAGTTGTGAAAGAAGTGCCTTTTTCAATTGTAAGCTCGAAAAGCATTGGATATATATCCCTACGTGGATTTGAGGGATTATCTCATAATCTTTTTCCTTCTATCATTCGGTCTTGGATGTCCCCAATAATGAATCCCATTTCTTATATTCATTCGTTTTGCATGGATACNGAGGATAATACGATTGATATTGCACCATTGCTTAGCACCCTTGCAAATATTCGAAGTGTTTTGGTAGTATGTGACACCGAATTTCAATTATCAAAGCAAGTTAAAAATTTTTTGGTTGAATATTTCTCGAATATTACAGAATCAGGAATTTCAAAGCAGCACTTCAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAGCTCTTCAATGCTGTCAGCGATAACATATCTGAGGTATTGTCAAGCAGTGAGTCTTGTGATGTTTGTCTCCCAGCTGTGAATGATCCATATTGTATGGCCCATATGGGTGAGGGACACTCTGTTTCTTTCATTGTGCCTGAAGATGGTGATATGAAAGGAATGATTTTGTGTGTTGTTTATTTATCAACTCCTAAGATCATTAAACCTGAATTTACTACAGTCGTAATTGTTAATTACACAAAGTGTACATTCCAGATACACAACCATGGCATAGCAATTTCCTTTAAAGATGAAGATTGGCATGGCATAATGTCAAATTTAGAATCTGGAGACAATGTGGAGATTTTTGTGAATTTCGGTAATGGATTGATGGTCAAAAACACAATAGTATATCTGATATGGGGTGAAGCAGAGAACATGGAAAAAGCGTCTGAGCCAAAGAAACATTCTCTCATTAGATTCATAAAGAAAGTTGTAATGTAA	3021	0.3727	MTIYFNVSCIHEKLDLQQYEGHNCYHRLRLLVVEKLREDPVEEKLTIEFRKAKIYRVTNSALSTVPLTTFLLYPNAVKSTHIQEPILSHCRVTIVVFTQTYSQSAWCLHQLQQIIDWHETYCRHVLPVYYEIQPSDVRFQKGDFGKALKATAQQTFSGQELEHGMSRWSHALTKAANLFGWDESNHRSDAELVDKIVKSVVNLPVLSATKFPVGLQSHVEDLIRTIKNKSTEVCIIEISGEEGSGKTTLAKAIYNQIHWKFKDKSFIENISHVSGTRGLLRLQEQLLLDVLKQEVEIPSVDVGKTMIRERLLGKRVLIVLDDVNYSNNLFDLRDCLKLLVEGTVIIVTSTYGIHISDQANSDFWVERMNEEESLELLSWHAFREPKPKEEYEDLARRVVSYCGGLPLALEVVGSTLFEKTKKEWNSSLFAIDGLLPDPEIIKLSIEGSLNEMEKDIFLDICCFFIGKSRAYVTKILNGCGVDADNGIRVLIERXLIKINKNNKLGMHPLLQEIGIRIIQKNSGKDLGKNRRLWFDKDTKYGTEAKQWLPVKQPSVFTPFESVQPTVNSEYLLKKLRWISSHGLSSERLPNNFYQHDVIAIDLKRSLLRFLWKTPQVMTSLKVLNLSHSKHLTTTPDFTGLPSLEHLILKYCSRLSKVHQSIGSLNSLILLNLKDCTSLNNLPTEIYELKSLRTFILSGCSKIHIMDKDIAKLGSLITLIAENTVVKEVPFSIVSSKSIGYISLRGFEGLSHNLFPSIIRSWMSPIMNPISYIHSFCMDTEDNTIDIAPLLSTLANIRSVLVVCDTEFQLSKQVKNFLVEYFSNITESGISKQHFRCSLIGVGAYHQLFNAVSDNISEVLSSSESCDVCLPAVNDPYCMAHMGEGHSVSFIVPEDGDMKGMILCVVYLSTPKIIKPEFTTVVIVNYTKCTFQIHNHGIAISFKDEDWHGIMSNLESGDNVEIFVNFGNGLMVKNTIVYLIWGEAENMEKASEPKKHSLIRFIKKVVM*	1007

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vra9g0901	1006	SUPERFAMILY	"Winged helix" DNA-binding domain	439	537	IPR036390	-
	Vra9g0901	1006	SUPERFAMILY	Toll/Interleukin receptor TIR domain	68	181	IPR035897	-
	Vra9g0901	1006	ProSiteProfiles	TIR domain profile.	27	204	IPR000157	GO:0007165
	Vra9g0901	1006	Pfam	TIR domain	86	205	IPR000157	GO:0007165
	Vra9g0901	1006	PANTHER	RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED	62	979	-	-
	Vra9g0901	1006	PANTHER	LEUCINE-RICH REPEAT-CONTAINING PROTEIN	62	979	IPR044974	GO:0006952
	Vra9g0901	1006	SUPERFAMILY	L domain-like	567	749	-	-
	Vra9g0901	1006	Gene3D	-	367	433	IPR042197	-
	Vra9g0901	1006	PRINTS	Disease resistance protein signature	235	250	-	-
	Vra9g0901	1006	PRINTS	Disease resistance protein signature	310	324	-	-
	Vra9g0901	1006	PRINTS	Disease resistance protein signature	402	416	-	-
	Vra9g0901	1006	PRINTS	Disease resistance protein signature	615	631	-	-
	Vra9g0901	1006	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	196	460	IPR027417	-
	Vra9g0901	1006	Gene3D	-	201	357	IPR027417	-
	Vra9g0901	1006	CDD	AAA	238	351	-	-
	Vra9g0901	1006	Gene3D	-	47	200	IPR035897	-
	Vra9g0901	1006	SMART	till_3	18	178	IPR000157	GO:0007165
	Vra9g0901	1006	Pfam	NB-ARC domain	216	426	IPR002182	GO:0043531
	Vra9g0901	1006	Gene3D	Ribonuclease Inhibitor	559	826	IPR032675	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vra9g0901	Vra-Chr9	10772240	10776632	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vra9g0901	87	732	WRKY Transcription Factor Family	AT4G12020	27.931	1.29e-53	202

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vra9g0901	-		-	var:108346736	1351.65