Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0899 ATGGAAAGATATAAAATTTTGAGGGAGCTCGGGGATGGTTCTTGCGGTCATGTATATAAAGCCCGTGATATGCGAACATATGAGATTGTTGCTGTCAAAAAGTTGAAAAGAAAGTTTTGTTTCTGGGAAGAATGCACAAATTTAAGAGAAGTTAAGGCCCTCCGTAAAATGAATCACCCAAATATCATAAAGTTGAAAGAGGTTGTTAGAGAAAATAATGAACTATTTTTCATTTTTGAATACATGGATTGTAATCTTTACCAATTAATAAAGGAGAGAGAAAAACCCTTTTCAGAGGAAGAGATACGGTGCTTTGTGAGGCAAATGCTGGAAGGACTTAGTCATATGCACAAGAAAGGATTCTTTCATCGGGATTTAAAACCTGAGAATTTGCTGGTATCAAATGATGTTTTGAAAATTGCCGATTTTGGACTGGCTAGAGAAGTATCATCGATGCCTCCATATACTCAATATGTTTCCACACGGTGGTATCGAGCTCCAGAAGTTTTGTTGCGAGCCCCTTCTTATACTCCTGCTGTTGACATGTGGGCAGTTGGTGCTATATTAGCTGAGCTTTTTACTTTGACCCCTTTATTTCCTGGTGAAAGTGAAATAGATCAACTGTACAAAATATATGGCATTCTTGGGATGCCAGATTCCTCTGCTTTCACCATCAGGGCAAACAACTCTCAATTATTGGATTTGGTTTCTCATGAAATTGTTCCACCTGTGAAACTTTCTAACATCATTCCAAATGCTAGTTCGGAAGCTATAGACTTGATGACACAACTGCTACATTGGGACCCATCAAGAAGGCCAGATGCAGACCAGTCATTACAACATCCATTTTTCCATGTGAATGCATGGGTTCCTTATCCACTCAGTGATCCACTTGAGCTGAAGCTGAGTAGCAAGAGGGCAAAGCCAAATCTCGAGCTTAAATTGCAGGATTTTGGCCCCGAACCCGATGATTGTTTTCTTGGCTTGACTTTAGCTGTAAAGCCCAGTGTTTCAAACATAGATGTGGTCCAAAATGTATCGCAGGGTGTAAGAGAGAATATGCTATTTTGCTCAGATTTTAATGATCATTCAGACCAGTCAGTATTCTGGACCTTATTATCTCCTGATCGAAATGGTGTTGCTAACTCAGCAGAGACTTCACTGTCACTGTCATTCAGTTCAGTGCAACAACATCCGCCAATTGGAGTTCCACAGTCTACGGGATTTTCTTTTCAGCCTTTGCAGCCTAACATCTTAACTACACCATTTTTGGCACTGTCTTCTCCCTTCCAGCGCGGCCACTGCCTTTGA 1311 0.4058 MERYKILRELGDGSCGHVYKARDMRTYEIVAVKKLKRKFCFWEECTNLREVKALRKMNHPNIIKLKEVVRENNELFFIFEYMDCNLYQLIKEREKPFSEEEIRCFVRQMLEGLSHMHKKGFFHRDLKPENLLVSNDVLKIADFGLAREVSSMPPYTQYVSTRWYRAPEVLLRAPSYTPAVDMWAVGAILAELFTLTPLFPGESEIDQLYKIYGILGMPDSSAFTIRANNSQLLDLVSHEIVPPVKLSNIIPNASSEAIDLMTQLLHWDPSRRPDADQSLQHPFFHVNAWVPYPLSDPLELKLSSKRAKPNLELKLQDFGPEPDDCFLGLTLAVKPSVSNIDVVQNVSQGVRENMLFCSDFNDHSDQSVFWTLLSPDRNGVANSAETSLSLSFSSVQQHPPIGVPQSTGFSFQPLQPNILTTPFLALSSPFQRGHCL* 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0899 436 PANTHER CYCLIN-DEPENDENT KINASE F-4 1 308 - -
Vra9g0899 436 ProSitePatterns Serine/Threonine protein kinases active-site signature. 121 133 IPR008271 GO:0004672|GO:0006468
Vra9g0899 436 Pfam Protein kinase domain 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0899 436 CDD STKc_MAK_like 4 284 - -
Vra9g0899 436 Gene3D Transferase(Phosphotransferase) domain 1 83 289 - -
Vra9g0899 436 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 1 308 - -
Vra9g0899 436 SMART serkin_6 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0899 436 ProSiteProfiles Protein kinase domain profile. 4 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0899 436 SUPERFAMILY Protein kinase-like (PK-like) 1 285 IPR011009 -
Vra9g0899 436 Gene3D Phosphorylase Kinase; domain 1 1 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0899 Vra-Chr9 10745517 10753234 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0899 7 284 MAP Kinase Gene Family AT4G01370 40.559 9.84e-65 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_RCK Vra9g0899 Pkinase 2e-76 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0899 K08829 K08830 gmx:100792842 819.69