Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0896 ATGGAACCTAACGGGATTGGCGAACTCAAGGTACCGTTGTTGCAGCCTCCGGAGGCTGCCGCCGCCGTTAGGACAGTCATGTTTCAACTGAGCGACATCAAGTGTGCTTCGTGCGTAAATTCCGTCGAGGCCGTTGTTGGGGGTCTTAACGGCGTGAAAAGCGTCGCCGTTTCGCCGCTTGATGGCCGCGCTGCCGTCAAGTTTGATCCCAAGTTGGTTACTGTGAAACAAATAAAAGAAGGCATAGAGGAGAGTGGGTTTGGAGTTGGTGAGCTTCATGAACAGGACATTGCAGTGTGCCGGGTGCGGATTAAAGGAATGGCATGCACAAGCTGCTCTGAGTCTGTTGAGAACGCCCTTCAAATGGTTGAAGGGGTGAAAAAGGCAATAGTTGGTCTTGCTTTGGAGGAGGCAAAAGTGCACTTTGATCCTAATCTAACCGATGTTGACAAGATAATTGAGGCCATAGAGGATACAGGTTTTGGAGCTGATCTTATTAGCTCTGGGAATGATGCGAACAAAGTGTTTCTAAAGCTGGAAGGTGTGGACTCCGTAGAAGATGTAAATTTATTAATGTCTTCTCTTGAGTTAGCTGCGGGGGTGAACCATGTCGAGATGGATTTGTCAGAACATAAAGTTACAGTTAGCTATGATCCGGATGTTACAGGTCCAAGGTCTCTCATTCACTGTGTTCAGGAAGCTAGCTGTGGCCCCAAGAAGTATCAAGCAACCTTATACTCTCCTTCGACGCAAAGAGGACGGGATAAGGTGAACGAAATCCGTATGTATAGGGACCAATTTTTGTTCAGCTGCTTATTTTCTGTTCCCGTCTTTCTATTTGCCATGGTGTTTCCCATGTTTCCTCCTTATGGAAACTGGTTAAACTACAGGGTCCATAACATGCTTACTCTTGGGCTGTTTTTAAGATGGATTCTTTGCACGCCTGTCCAGTTCATAATTGGCAAAAGGTTCTATGTTGGATCATATCACGCACTGAAGCGAAAATCTGCTAACATGGATGTGCTTGTTGCACTTGGCACAAATGCTGCTTATTTTTACTCCCTATATATTTTAATAAAAGCACTGACTTCGGATACATTTGAAGGACAAGATTTCTTTGAGACAAGTTCTATGTTGATATCCTTTATTCTATTAGGGAAGTATTTGGAAATTGTGGCTAAAGGGAAAACATCGGATGCTTTAGGAAAGCTGACTCAGCTTGTTCCTGATAAAGCTTATTTAGTAGCAATTGATACTGATGGAAATATAACCACTGAGACAGAAATTGACACTCAACTTATACAAAAAAATGACATAATTAAGATTGTTCCTGGGGCCAAAATTCCTGTTGATGGAATTGTTATAAAAGGGCAAAGCTACGCAAATGAAAGTATGATCACTGGGGAGGCAAGACCTGTTGATAAAAGCCCAGGAGACAAGGTCATCAGTGGAACCATCAATGAAAATGGATGCTTGCTGGTTAAGGCCACACATGTTGGATCAGACACTGCACTTTCTCAAATAGTTCAACTCGTTGAAGCTGCTCAACTTGCCAAAGCACCAGTTCAAAAACTTGCTGACCATATTTCAAGGGTTTTTGTTCCAATAGTGGTTGTTGTGGCACTGATAACTTGGCTTGGATGGTTCATTCCTGGGCAAGCTGGTATTTTCCCTAAACATTGGATACCAACAGCAATGGATGCATTCGAGCTTGCTTTACAGTTTGCTATTTCTGTATTGGTTGTTGCTTGCCCATGTGCTCTGGGACTTGCTACACCAACAGCAGTCATGGTTGCTTCAGGCATGGGTGCTTCTCAAGGTGTGCTCATAAAGGGCGGAAATGCACTGGAAAAGGCACACAAGGTAACTGTTGTTGTGTTTGATAAGACTGGTACTCTAACAGTTGGGAAGCCAGAGGTAGTTAGCGCAGTTCTGTTTTCTGAATTTTCTATGGAGGAGTTATGTGACATGACAATTGCTGTGGAGGCGAGCAGTGAGCACCCGATAGCAAAAGCTGTTGTGGTACATGCGAAGAGGCTGCGCAAGAAGTTTGGTTCTTCCACAGAGGAAATATTCGATGTGGATGATTTTGAGGTACACATGGGAGCTGGTGTAAGTGGAAAAGTTGGTGATAGAACGGTTGTAGTTGGAAACAAGAGACTCATGCATGCTTGTAATATTCCAATAGGTTCTCAGGTTGAGAAGTACATCTCTGAAAATGAAAATCTGGCTAGAACTTGCATTTTAGTTTCAATTGATGGAAAGATTGCTGGTGCATTCTGTATAACTGATCCTGTAAAGCCAGAGGCTAGACGTGTTGTATCTTTTCTCCACTCCATGGGCATTTCAAGCATCATTGTGACTGGTGATAACCGTGCTACCGCAACTGCTATTGCAAATGAAGTAGGTATTGATGAGGTTTTTGCTGAGACAGATCCTGTTGGCAAAGCTAACAAGGTGAAAGACTTGCAGATGAAAGGAATGACTGTGGCAATGGTAGGTGATGGAATAAATGACTCGCCAGCCCTGGTTGCTGCTGATGTTGGGATGGCAATTGGTGCTGGAACTGACATAGCCATAGAAGCAGCCGATATAGTTCTGGTCAAAAGCAGTTTGGAAGATGTGATTACAGCCATAGATTTATCCAGAAAGACCATGTCACGCATCCGACTGAACTACATCTGGGCTCTTGGTTACAACATTCTAGGCATGCCAATTGCTGCTGGAGTCTTGTACCCTTTTGCAGGAATCAGATTGCCCCCATGGCTTGCTGGTGCTTGCATGGCTGCTTCTTCTCTTAGTGTGGTTTCATCCTCTCTTCTGCTGCAGTTCTATAAAAAACCTCTGCATATAGAATCCCCTTGA 2865 0.4394 MEPNGIGELKVPLLQPPEAAAAVRTVMFQLSDIKCASCVNSVEAVVGGLNGVKSVAVSPLDGRAAVKFDPKLVTVKQIKEGIEESGFGVGELHEQDIAVCRVRIKGMACTSCSESVENALQMVEGVKKAIVGLALEEAKVHFDPNLTDVDKIIEAIEDTGFGADLISSGNDANKVFLKLEGVDSVEDVNLLMSSLELAAGVNHVEMDLSEHKVTVSYDPDVTGPRSLIHCVQEASCGPKKYQATLYSPSTQRGRDKVNEIRMYRDQFLFSCLFSVPVFLFAMVFPMFPPYGNWLNYRVHNMLTLGLFLRWILCTPVQFIIGKRFYVGSYHALKRKSANMDVLVALGTNAAYFYSLYILIKALTSDTFEGQDFFETSSMLISFILLGKYLEIVAKGKTSDALGKLTQLVPDKAYLVAIDTDGNITTETEIDTQLIQKNDIIKIVPGAKIPVDGIVIKGQSYANESMITGEARPVDKSPGDKVISGTINENGCLLVKATHVGSDTALSQIVQLVEAAQLAKAPVQKLADHISRVFVPIVVVVALITWLGWFIPGQAGIFPKHWIPTAMDAFELALQFAISVLVVACPCALGLATPTAVMVASGMGASQGVLIKGGNALEKAHKVTVVVFDKTGTLTVGKPEVVSAVLFSEFSMEELCDMTIAVEASSEHPIAKAVVVHAKRLRKKFGSSTEEIFDVDDFEVHMGAGVSGKVGDRTVVVGNKRLMHACNIPIGSQVEKYISENENLARTCILVSIDGKIAGAFCITDPVKPEARRVVSFLHSMGISSIIVTGDNRATATAIANEVGIDEVFAETDPVGKANKVKDLQMKGMTVAMVGDGINDSPALVAADVGMAIGAGTDIAIEAADIVLVKSSLEDVITAIDLSRKTMSRIRLNYIWALGYNILGMPIAAGVLYPFAGIRLPPWLAGACMAASSLSVVSSSLLLQFYKKPLHIESP* 955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0896 954 ProSiteProfiles Heavy-metal-associated domain profile. 174 240 IPR006121 GO:0046872
Vra9g0896 954 SUPERFAMILY Calcium ATPase, transduction domain A 426 512 IPR008250 -
Vra9g0896 954 TIGRFAM ATPase-IB_hvy: heavy metal translocating P-type ATPase 339 942 IPR027256 GO:0006812|GO:0016021|GO:0019829
Vra9g0896 954 ProSiteProfiles Heavy-metal-associated domain profile. 99 165 IPR006121 GO:0046872
Vra9g0896 954 TIGRFAM TIGR00003: copper ion binding protein 27 89 IPR006122 GO:0005507
Vra9g0896 954 TIGRFAM TIGR00003: copper ion binding protein 102 162 IPR006122 GO:0005507
Vra9g0896 954 PRINTS P-type cation-transporting ATPase superfamily signature 462 476 - -
Vra9g0896 954 PRINTS P-type cation-transporting ATPase superfamily signature 626 640 - -
Vra9g0896 954 PRINTS P-type cation-transporting ATPase superfamily signature 758 769 - -
Vra9g0896 954 PRINTS P-type cation-transporting ATPase superfamily signature 780 790 - -
Vra9g0896 954 PRINTS P-type cation-transporting ATPase superfamily signature 833 852 - -
Vra9g0896 954 PRINTS P-type cation-transporting ATPase superfamily signature 856 868 - -
Vra9g0896 954 CDD P-type_ATPase_Cu-like 267 929 - -
Vra9g0896 954 Pfam haloacid dehalogenase-like hydrolase 623 847 - -
Vra9g0896 954 Gene3D - 171 247 - -
Vra9g0896 954 PANTHER COPPER-TRANSPORTING ATPASE HMA5-RELATED 18 951 - -
Vra9g0896 954 SFLD C1.7: P-type atpase like 608 885 - -
Vra9g0896 954 Gene3D - 99 169 - -
Vra9g0896 954 CDD HMA 27 89 IPR006121 GO:0046872
Vra9g0896 954 Pfam Heavy-metal-associated domain 101 161 IPR006121 GO:0046872
Vra9g0896 954 Pfam Heavy-metal-associated domain 28 87 IPR006121 GO:0046872
Vra9g0896 954 Gene3D - 394 516 - -
Vra9g0896 954 Gene3D - 617 883 IPR023214 -
Vra9g0896 954 Gene3D - 19 90 - -
Vra9g0896 954 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 379 910 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra9g0896 954 Gene3D - 637 766 IPR023299 GO:0000166
Vra9g0896 954 PANTHER ATP7, ISOFORM B 18 951 - -
Vra9g0896 954 ProSitePatterns Heavy-metal-associated domain. 104 133 IPR017969 GO:0046872
Vra9g0896 954 ProSitePatterns Heavy-metal-associated domain. 30 58 IPR017969 GO:0046872
Vra9g0896 954 CDD HMA 102 163 IPR006121 GO:0046872
Vra9g0896 954 SUPERFAMILY Calcium ATPase, transmembrane domain M 371 619 IPR023298 -
Vra9g0896 954 PRINTS Copper-transporting ATPase 1 signature 25 50 - -
Vra9g0896 954 PRINTS Copper-transporting ATPase 1 signature 51 74 - -
Vra9g0896 954 PRINTS Copper-transporting ATPase 1 signature 122 143 - -
Vra9g0896 954 SUPERFAMILY HAD-like 624 939 IPR036412 -
Vra9g0896 954 Pfam E1-E2 ATPase 419 604 - -
Vra9g0896 954 SFLD p-type atpase 608 885 IPR044492 -
Vra9g0896 954 SUPERFAMILY HMA, heavy metal-associated domain 22 90 IPR036163 GO:0046872
Vra9g0896 954 SUPERFAMILY HMA, heavy metal-associated domain 95 169 IPR036163 GO:0046872
Vra9g0896 954 ProSiteProfiles Heavy-metal-associated domain profile. 25 91 IPR006121 GO:0046872
Vra9g0896 954 SUPERFAMILY HMA, heavy metal-associated domain 169 238 IPR036163 GO:0046872
Vra9g0896 954 ProSitePatterns E1-E2 ATPases phosphorylation site. 628 634 IPR018303 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0896 Vra-Chr9 10693744 10701110 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0896 23 952 Primary Pumps ATPases AT1G63440 56.410 0.0 1049
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0896 K17686 - gmx:100793894 1700.64