Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0894 ATGGACGAGGATTTCGACATGCCGCCGGCGGATTCCATGAACGACGATTTCGACTTCGCCGGCGCCGACGGCGGGGACATTGACCCTCCCGTCCTCAAGGTTGGTGAGGAGAAAGAAATCGGAACACAGGGCTTGAAGAAGAAACTCCTCAAGGAAGGTGAAGGATGGAACACTCCTGAAGTTGGTGACGAGGTTCAAGTTCACTACACTGGGACGTTGCTTGATGGCACTAAGTTTGATTCTAGCAGAGATAGGGGAACTCCTTTCAGTTTCACGCTTGGACAAGGGCAAGTTATTAAAGGATGGGATCAAGGTATTGCAACGATGAAAAAAGGTGAGAATGCCCTTTTTACCATCCCAGCCGAGCTAGCGTATGGTGAATCTGGTTCTCCTCCAACTATTCCCCCCAATGCAACTCTTCAGTTTGACGTGGAGCTGTTGTCCTGGACTAGTGTTAAGGACATATGTAAGGATGGAGGTTTATTTAAGAAGATAGTTACTGAGGGGGAAAAATGGGAGAACCCCAAGGATCTTGATGAAGTTTTAGTGAATTACGAAGCACGTCTTGAAGATGGGACTTTAATAGCAAAATCTGATGGAGTGGAGTTCACAGTCAAAGATGGTTATTTTTGTCCTGCTTTGTCAAAGGCTGTTAAAACCATGAAGAAGGGAGAGAAAGTGATTTTGACTGTGAAGCCACAATATGGATTTGGTGAGAAGGGTAAGCCAGCACATGGTGATGAAGGTGCAGTTCCTCCAAATGCATCATTGGAGATTTCTCTTGAGTTAGTTTCTTGGAAGACTGTGTCAGAGGTAACTGATGACAAGAAGGTCATTAAGAAGATCATCAAAGAAGGGGAAGGATATGAGCGTCCAAATGAAGGGGCAGTTGTGAAATTGAAAGTAATTGGTAAGCTGCAAGATGGTACCTTGTTTTTGAAGAAGGGTCATGATAGCGAAGGGGAGCTGTTTGAATTCAAAACTGATGAGGAACAAGTAATTGATGGGCTTGACAGAGCTGTGTTGACTATGAAGAAGGGTGAGGTGGCATTGTTAACTATTGCGCCTGAGTATGGTTTTGGCTCATCAGAGTCTAAACAGGAACTTGCTGTGGTTCCTGCTAACTCCACTTTGTATTATGAGGTTGAGCTAGTATCGTTTGAGAAGGAAAAGGAGTCATGGGACATGAACACACCAGAGAAGATTGAAGCTGCTGGCAAGAAGAAAGAAGAAGGGAATGCATTATTTAAAGCTGGTAAATATGCAAGAGCTTCTAAAAGATATGAAAAGGCTGTAAAGTTCATAGAATACGATACATCCTTCAGTGAAGAGGAGAAGAAGAGCTCCAAGACCTTGAAGGTCGCCTGTAATCTAAACAACGCAGCATGCAAGTTGAAGCTAAAAGATTATAAACAAACAGAGAAATTGTGCACAAAGGTACTGGAACTTGAGAGCACTAACGTGAAGGCTCTCTATAGAAGGGCCCAGGCATACATCCACTTGGCTGATTTAGATTTGGCTGAATTTGATATTAAGAAAGCTCTTGAGCTTGACCCTGACAACAGGGAAGTCAAGCTTGAGTACAGGACCCTGAAGGAAAAGATGAAGGAATACAACAAAAAAGAAGCAAAATTTTATGGAAATATTTTCAACAAACTGCATAAGCTAGATACTTTGGACAATAACAAAACAGAGTTGAAGGATGCCCAACCCATGAATGTCGACAGCAAGGCATAA 1737 0.4312 MDEDFDMPPADSMNDDFDFAGADGGDIDPPVLKVGEEKEIGTQGLKKKLLKEGEGWNTPEVGDEVQVHYTGTLLDGTKFDSSRDRGTPFSFTLGQGQVIKGWDQGIATMKKGENALFTIPAELAYGESGSPPTIPPNATLQFDVELLSWTSVKDICKDGGLFKKIVTEGEKWENPKDLDEVLVNYEARLEDGTLIAKSDGVEFTVKDGYFCPALSKAVKTMKKGEKVILTVKPQYGFGEKGKPAHGDEGAVPPNASLEISLELVSWKTVSEVTDDKKVIKKIIKEGEGYERPNEGAVVKLKVIGKLQDGTLFLKKGHDSEGELFEFKTDEEQVIDGLDRAVLTMKKGEVALLTIAPEYGFGSSESKQELAVVPANSTLYYEVELVSFEKEKESWDMNTPEKIEAAGKKKEEGNALFKAGKYARASKRYEKAVKFIEYDTSFSEEEKKSSKTLKVACNLNNAACKLKLKDYKQTEKLCTKVLELESTNVKALYRRAQAYIHLADLDLAEFDIKKALELDPDNREVKLEYRTLKEKMKEYNKKEAKFYGNIFNKLHKLDTLDNNKTELKDAQPMNVDSKA* 579
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0894 578 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 1 274 - -
Vra9g0894 578 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 276 387 - -
Vra9g0894 578 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 387 558 - -
Vra9g0894 578 SUPERFAMILY FKBP-like 153 269 - -
Vra9g0894 578 SUPERFAMILY FKBP-like 30 154 - -
Vra9g0894 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 295 388 IPR001179 GO:0003755
Vra9g0894 578 SUPERFAMILY TPR-like 394 552 IPR011990 GO:0005515
Vra9g0894 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 57 147 IPR001179 GO:0003755
Vra9g0894 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 289 385 IPR001179 GO:0003755
Vra9g0894 578 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 173 263 IPR001179 GO:0003755
Vra9g0894 578 Gene3D - 268 389 IPR046357 GO:0003755
Vra9g0894 578 Coils Coil 521 541 - -
Vra9g0894 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 178 267 IPR001179 GO:0003755
Vra9g0894 578 PANTHER PEPTIDYLPROLYL ISOMERASE 276 387 - -
Vra9g0894 578 PANTHER PEPTIDYLPROLYL ISOMERASE 387 558 - -
Vra9g0894 578 PANTHER PEPTIDYLPROLYL ISOMERASE 1 274 - -
Vra9g0894 578 SUPERFAMILY FKBP-like 271 405 - -
Vra9g0894 578 Pfam Tetratricopeptide repeat 488 521 IPR001440 GO:0005515
Vra9g0894 578 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 62 150 IPR001179 GO:0003755
Vra9g0894 578 SMART tpr_5 405 438 IPR019734 GO:0005515
Vra9g0894 578 SMART tpr_5 454 487 IPR019734 GO:0005515
Vra9g0894 578 SMART tpr_5 488 521 IPR019734 GO:0005515
Vra9g0894 578 ProSiteProfiles TPR repeat profile. 488 521 IPR019734 GO:0005515
Vra9g0894 578 MobiDBLite consensus disorder prediction 1 32 - -
Vra9g0894 578 Gene3D - 154 267 IPR046357 GO:0003755
Vra9g0894 578 Gene3D - 35 153 IPR046357 GO:0003755
Vra9g0894 578 Gene3D Tetratricopeptide repeat domain 391 548 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0894 Vra-Chr9 10669520 10674831 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0894 1 562 Calmodulin-binding Proteins AT3G25230 80.249 0.0 891
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0894 K09571 - gmx:100794411 1013.45