Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0893 ATGGGTATCTCCAGAGATTCTATGCACAAGAGGCGTGCCACTGGTGGAAAGAAGAAGGCCTGGAGGAAGAAGAGAAAGTATGAGCTTGGTCGCCAGCCTGCTAACACTAAGCTGTCAAGCAACAAGACTGTCAGGAGGATCCGTGTTAGAGGTGGCAATGTGAAGTGGAGAGCATTGAGATTGGATACTGGAAATTACTCATGGGGAAGTGAAGCTGTAACTCGCAAGACTCGTATACTTGATGTGGTATACAACGCCTCAAACAATGAGCTTGTGCGTACTCAGACCCTTGTCAAAAGTGCTATTGTTCAGGTTGATGCCGCTCCCTTCAAACAGTGGTATCTTCAGCACTATGGTGTTGACATTGGTAGGAAGAAGAAGACAGCTGCAAAGAAGGATTCTGCAGAGGAGGGTGACGCTGCAGCAGCAGAAGAAGCCAAAAAGAGTAATCATGTGCAAAGAAAACTAGAAAAGCGCCAGAAGGATCGCAAGCTTGATGCTCACATTGAGGAGCAGTTTGGTGGTGGTCGTTTACTTGCTTGTATTTCCTCTCGACCTGGTCAATGTGGCAGGGCTGATGGCTACATTCTGGAAGGTAAAGAGTTGGAATTTTACATGAAGAAACTCCAGAAGAAGAAGGGGAAAGGCGCTGCTTGA 657 0.4703 MGISRDSMHKRRATGGKKKAWRKKRKYELGRQPANTKLSSNKTVRRIRVRGGNVKWRALRLDTGNYSWGSEAVTRKTRILDVVYNASNNELVRTQTLVKSAIVQVDAAPFKQWYLQHYGVDIGRKKKTAAKKDSAEEGDAAAAEEAKKSNHVQRKLEKRQKDRKLDAHIEEQFGGGRLLACISSRPGQCGRADGYILEGKELEFYMKKLQKKKGKGAA* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0893 218 Gene3D - 27 213 - -
Vra9g0893 218 TIGRFAM eS8: ribosomal protein eS8 1 199 IPR001047 GO:0003735|GO:0005840|GO:0006412
Vra9g0893 218 ProSitePatterns Ribosomal protein S8e signature. 11 30 IPR018283 GO:0003735|GO:0005840|GO:0006412
Vra9g0893 218 MobiDBLite consensus disorder prediction 11 26 - -
Vra9g0893 218 Gene3D Ribosomal protein S8e, subdomain 108 176 IPR042563 -
Vra9g0893 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 - -
Vra9g0893 218 MobiDBLite consensus disorder prediction 1 38 - -
Vra9g0893 218 CDD Ribosomal_S8e_like 5 197 - -
Vra9g0893 218 Pfam Ribosomal protein S8e 5 197 IPR022309 -
Vra9g0893 218 MobiDBLite consensus disorder prediction 131 163 - -
Vra9g0893 218 PANTHER 40S RIBOSOMAL PROTEIN S8 1 218 IPR001047 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0893 Vra-Chr9 10664669 10667186 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0893 1 206 Cytoplasmic Ribosomal Protein Gene Family AT5G59240 85.437 2.34e-129 361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0893 K02995 - gmx:100794937 374.015