Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0891 ATGGATAACGGCTCCTCATCATACAAACTCCCACGGAAGTACGATGTGCTCATCAACTTCACTGGAGAAGACATAAATAGAAAATTTGTTTCTCATCTCAATTCTGCCATCTCTACGGTTGGTCTCACCACTTTCCTTCACCATCACAATGCAATAGAGTCAACTCACATCCAACAACCTATTCTCAGCCACTGTCGGGTAGCAATTGTTGTTTTCAACCAAACCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCTACAAATCATCGACTGGCACGAAACTTATGGCCGACATGTTCTGCCCGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGTGACTTTGGAAAAGCCTTTAAGGCAACTGCTCAAAAAACATTTTCAGGACAAGAACTGGAGCATGGCATGTCCAGATGGAGCCATGCACTCACTAAAACTGCAAATTTCTTTGGATGGGATGAGAGCAATCATAGGAGTGATGCTGAACTAGTGGAGAAAATTGTTAAGAGCGTTCTTAATTTACCAGTCTTATCTGCTACTAAATTTCCAGTTAGATTACAATTATACGTCGAAGATCTGATTCGAACTATCAAAACTAAATCCACGGAAACTTGTATAATAGGAATAGGTGGATCGGGAGGATATGGTAAAACCACTCTTGCCAAAGCCATTTACAATCAAATTCATGGGACATTCAAGAAGAAAAGTTTCATTGAAAATATTTCACATGTTAGGGGAATAAGAGGGCTTCTTGGTTTACAAGAACAACTTCTTTTAGATGTCCTAAAACAAAAGGTGGAGATTCCTAGCGTTGATGTGGGAAGAACTATGATTCGGGAAAGACTTTTAGGAAAAAGGGTTCTCATTGTACTTGACGATGTTTCTTACTTTAGTTTATTCGACTTATGGGATTGTCGTAAATGGCTCGTTGAAGGAACTGTAATAATCGTAACACATGAAATACCGCTGACAGGTCAAGTTAATTTTGTCTTTTGGTTAGAACCAATGAACGAAGAGGAATCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAGAAGAATACGAAGACCTTGCAAGAAGTGTAGTTAGTTATTGTGAAGGACTACCGCTGGCTCTTGAAGTCGTTGGAAGTTGTTTATTTGAAAAGACGAAAGAAGAATGGAACACTTTATTAATTAAATATGCGATAGTTGGCAGGCATCGTGTTTCAGAGATAATAAAAGTAAGCATCGAAGGTTCAATCAATGAAATGGAGAAAGATATATTCCTTGATATATGTTGTTTCTTTGTTGGTAAGAGCAGAGCCTATGCTACGAAGATCCTAAATGGCTGTGGAGTAGACGCTGATATGGGAATAAGAGTTCTCATCCAGCGTAACCTCATCAAAATTAACAACAACAACAAATTTGGAATCCATCCTTTGCTACAAGAAATCGGAGTACAAATTATTCGTGAAAATTTAGAAACAGATCATGAGAAGAACAGGCTGTGGTTTGATAAGGATGTAAAACATGGGACAAAAGCCATGCAGTGGTTGCCTGTCAATGCCTACGGTAGTGCACAACCGACTGTAAATTCTGACTACCTTCTTAAGAAACTAAGATGGATCAGTTGGCATGGGCTTTCTTCAGAACGTCTACCTAACAACTTTTATGAGCATAATGCAATAGCTATTGATTTAAAACGCAGTCTTCTTCGATTTCTCTGGAAAACACCCCAGGTTTTGAGATCGCTAAAAGTCCTTAACCTCAGTCACTCCAAGCATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAACACCTCAGTTTCAAATATTGTTCAAGATTACGGAAACTACACCGATCTATTGGATCACTCAACAGTCTTATACTGCTAAATTTGAAATACTGTACAAGTCTAAACAATCTTCCGAAAGAGATATATGAGTTGAAATCTTTAAGAACCTTCATTCTCTCTGGTTGTTCCAAGATTCACATAATGGATAAAGATATAGCAAAGTTGGAATCCTTGATAACTCTAATTGCCGAAAATACAGCTGTGAAAGAAGTGCCTTTTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCCCTACCTGGATTTGAGGGATTATCTCATAATCTTTTTCCTTCCATCATTCGGTCTTGGATATCCCCAATAATGAATCCCATCTCTTATATTCATTCGTTTTGCATGGATACTGAGGATAATACGATTGATATTGCACCGTTGCTTAGCACCCTTGCAAATATTCGAAGTGTTTTGGTAGCATGTGACACCGATTTTCAATTATCTAAGCAAGTCAAAAATATTTTGGATGAATACTTTTCGAGTATTACAAAATCAGGAATTTCAAAGCAGCACTTGAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAATTCTTCAATGCTGTCAGGGATAACATATATGAGGTATTGGCAAACAGTGAGTCTGGTGATGTTTGTCTCCCAGCAGTCAATGATCCTTATTGTTTGGCCCATATGGGTGATGGACACTCTGTTTCTTTCATTGTGCCTCAAGATCGTTACATGAAAGGAATGACTTTGTGTGTTGTTTATTTATCAAACCCTGAAGCCATTGAACCTCAATTTACTACTGTCGTAGTTATTAACTACACAAAGTGTAGATTCCAGATACACAACTATGGCACAGTCATTTCCTTTAAAGATGAAGATTGGCATGACATAATTTCAAATTTAGAATCTGGAGACAAGGTGGAGATTTTTGTGAATTTCGGCAATGGATTGGTGGTCAAGAACACCACGGTGTATCTGATATGTGGTGAATCAAAGAACATGAGAAAAGCCTTTGAGCCAAAGAAACATGGTCTCATTAGATTCGTAAAGAAAGTTGTAATGTGA 2922 0.3809 MDNGSSSYKLPRKYDVLINFTGEDINRKFVSHLNSAISTVGLTTFLHHHNAIESTHIQQPILSHCRVAIVVFNQTYSQSAWCLNQLLQIIDWHETYGRHVLPVYYEIQPSDVRLQKGDFGKAFKATAQKTFSGQELEHGMSRWSHALTKTANFFGWDESNHRSDAELVEKIVKSVLNLPVLSATKFPVRLQLYVEDLIRTIKTKSTETCIIGIGGSGGYGKTTLAKAIYNQIHGTFKKKSFIENISHVRGIRGLLGLQEQLLLDVLKQKVEIPSVDVGRTMIRERLLGKRVLIVLDDVSYFSLFDLWDCRKWLVEGTVIIVTHEIPLTGQVNFVFWLEPMNEEESLELLSWHAFREPKPKEEYEDLARSVVSYCEGLPLALEVVGSCLFEKTKEEWNTLLIKYAIVGRHRVSEIIKVSIEGSINEMEKDIFLDICCFFVGKSRAYATKILNGCGVDADMGIRVLIQRNLIKINNNNKFGIHPLLQEIGVQIIRENLETDHEKNRLWFDKDVKHGTKAMQWLPVNAYGSAQPTVNSDYLLKKLRWISWHGLSSERLPNNFYEHNAIAIDLKRSLLRFLWKTPQVLRSLKVLNLSHSKHLTTTPDFTGLPSLEHLSFKYCSRLRKLHRSIGSLNSLILLNLKYCTSLNNLPKEIYELKSLRTFILSGCSKIHIMDKDIAKLESLITLIAENTAVKEVPFSIVSSKSIGYISLPGFEGLSHNLFPSIIRSWISPIMNPISYIHSFCMDTEDNTIDIAPLLSTLANIRSVLVACDTDFQLSKQVKNILDEYFSSITKSGISKQHLRCSLIGVGAYHQFFNAVRDNIYEVLANSESGDVCLPAVNDPYCLAHMGDGHSVSFIVPQDRYMKGMTLCVVYLSNPEAIEPQFTTVVVINYTKCRFQIHNYGTVISFKDEDWHDIISNLESGDKVEIFVNFGNGLVVKNTTVYLICGESKNMRKAFEPKKHGLIRFVKKVVM* 974
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0891 973 SMART till_3 13 153 IPR000157 GO:0007165
Vra9g0891 973 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 173 434 IPR027417 -
Vra9g0891 973 Gene3D - 176 324 IPR027417 -
Vra9g0891 973 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 512 IPR044974 GO:0006952
Vra9g0891 973 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 518 946 IPR044974 GO:0006952
Vra9g0891 973 SUPERFAMILY "Winged helix" DNA-binding domain 410 511 IPR036390 -
Vra9g0891 973 Pfam NB-ARC domain 194 400 IPR002182 GO:0043531
Vra9g0891 973 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 512 - -
Vra9g0891 973 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 518 946 - -
Vra9g0891 973 SUPERFAMILY L domain-like 532 723 - -
Vra9g0891 973 SUPERFAMILY Toll/Interleukin receptor TIR domain 5 156 IPR035897 -
Vra9g0891 973 Gene3D - 340 420 IPR042197 -
Vra9g0891 973 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vra9g0891 973 PRINTS Disease resistance protein signature 210 225 - -
Vra9g0891 973 PRINTS Disease resistance protein signature 285 299 - -
Vra9g0891 973 PRINTS Disease resistance protein signature 374 388 - -
Vra9g0891 973 PRINTS Disease resistance protein signature 582 598 - -
Vra9g0891 973 Gene3D - 8 175 IPR035897 -
Vra9g0891 973 Pfam TIR domain 13 176 IPR000157 GO:0007165
Vra9g0891 973 Gene3D Ribonuclease Inhibitor 529 776 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0891 Vra-Chr9 10611655 10615478 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0891 12 699 WRKY Transcription Factor Family AT4G12020 26.622 2.22e-62 230
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0891 - - var:108346736 1404.81