Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0890 ATGGGCCAGCCGACATATTCTATGTTTCGGATAGAGCGAATGAACGCAGAGGAGTCCCTTGAGCTTTTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAGGAAGAATACGAAGACCTTGCAAGAAGAGTAGTTAGTTATTGTGGAGGACTACCACTAGTTCTTGAAATCATTGGAAGTAGTTTATTTGAAAGGACGGAAGAAGAATGGCATCGTGTACTGTTTGCGATAGATGGCAGGCATCGTGTTTCAGAGATAATAAAAGTAAGCATCGAAGGTTCACTCAATGAAATGGAAAAATATATATTCGTTGATGTATGTTGTTTGTTTGTCGGTAAGAGCAGAGCCTATGTTAGGAAGATCCTAAAGGGCTGTGGAGTAGATGCTGATATTGCAATAAGAGTTCTCATCCAGCGTAACCTCATCAAAATTGACAACAACAAAAAATTTCGAGTGCATCCTTTGCTACAAAATATCGGAGGACAAATTATTCATGAAAAAGTAGTAGGAGATTTTGAGAAGAACAGGCCACCGTCAAAATATGTAAGAACATTCTTTACATGTGGTTTGAAACTTCTTTTAAAAGCGTTTTCTTTCAGCTGTGCAGTACAACTTTTTTTTTTTTATTTGCTTTTTTCATCACAGGAGACAGAAGCCCTGCAGTGGTTGCCTGCGAAACTGCTCGCTGCCATCGAAAGTGTGCAGCCGACTTTAAATTCTCAGTACCTTTTTAAGAAACTAAGATGGATCAGTTCGTATGGGCTTTCTTCAGAATGTCTGCCTAACAACTTCTATTGGGATGATGCAACAGTGATTGATTTGAAACGAAGTCTTCTTCAATTTCTCTGGAAAACACCCCAGGTTTTGAGATCGCTAAAAGTCCTTAACCTCAGTCACTCCACGGATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAACACCTCATTTTGAAATATTGTTCTAGATTGCGCAAACTACACCAATCTATTGGATCACTCAACAGTCTTATCCTACTAAATTTGAAATTCTGTACAAGTCTAAACAATCTTCCAACAGAGATATATGAGTTGAAATCTTTAAGAACCTTCATTCTCTCTGGTTGTTCCAAGATTCACATAATGGATAAAGATATAGCAAAGTTGGAATCCTTGATAACTCTAATTGCTGATACACCTGTCAAACATGTGCCTTTTTCAATTGTAAGCTCAAAAGGCATTGGATATATGTCCCTACTAGGATTTGAGGGATTATCTTATAATCTTTTTCCTTCTATCATTCGGTCCTGGATGTCCCCAACAATGAATTCCATTTCTTATATTCATTCGTTTTGCATGGATATCGAGGATAATACGATTGATATTGCACCATTGCTTTGCACCCTTGCACATATTCGAAGTGTTTTGGTAGCATGTGAAACCGAATTTCAACTATCTAAGCAAGTGACAAATATTTTGGTTGAATATTTTGCGAATATTACAGAATTAGGAATTTCAAAGCAGCACTTGAGGTGTTCTCTGATTGGTGTTGGAGCATACCATCAATTCTTAAATGCTATCAGTGATAACATATATGAGCTATTGGGAAGTAGTGAGTCTGGAGATGTTTGTCTCCCAACTGTGAATGATCCTTATTGTATGGCCCATATGGGTGAGGGACACTCTGTTTCTTTCACTGTGCCTGAAGATCGTGACATGAAAGGAATGGCTTTGTGTGTTGTTTATTTATCAAATCCTAAAATCATTGAACCTGAATTTACTACTGTCATAATTGTTAATTACACAAAGTGTACATTCCAGATACACCACCATGGCACAGTAATTTCTTTTAGAGATGAAGATTGGCATGACATAATGTCAAATTTAGAATCTGGAGACAATGTGGAAATTTTTGTGAATTTCGGTAATGGATTGGTGGTAAAGAACACAACAGTGTATCTGATATGGGGTGAAGCAGAGAACATGGAAAAAGCGTCTGAGCCAAAAAAACATTCTCTCATTAGATTCGTAAAGAAAGTTGTAATGTGA 2034 0.3751 MGQPTYSMFRIERMNAEESLELFSWHAFREPKPKEEYEDLARRVVSYCGGLPLVLEIIGSSLFERTEEEWHRVLFAIDGRHRVSEIIKVSIEGSLNEMEKYIFVDVCCLFVGKSRAYVRKILKGCGVDADIAIRVLIQRNLIKIDNNKKFRVHPLLQNIGGQIIHEKVVGDFEKNRPPSKYVRTFFTCGLKLLLKAFSFSCAVQLFFFYLLFSSQETEALQWLPAKLLAAIESVQPTLNSQYLFKKLRWISSYGLSSECLPNNFYWDDATVIDLKRSLLQFLWKTPQVLRSLKVLNLSHSTDLTTTPDFTGLPSLEHLILKYCSRLRKLHQSIGSLNSLILLNLKFCTSLNNLPTEIYELKSLRTFILSGCSKIHIMDKDIAKLESLITLIADTPVKHVPFSIVSSKGIGYMSLLGFEGLSYNLFPSIIRSWMSPTMNSISYIHSFCMDIEDNTIDIAPLLCTLAHIRSVLVACETEFQLSKQVTNILVEYFANITELGISKQHLRCSLIGVGAYHQFLNAISDNIYELLGSSESGDVCLPTVNDPYCMAHMGEGHSVSFTVPEDRDMKGMALCVVYLSNPKIIEPEFTTVIIVNYTKCTFQIHHHGTVISFRDEDWHDIMSNLESGDNVEIFVNFGNGLVVKNTTVYLIWGEAENMEKASEPKKHSLIRFVKKVVM* 678
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0890 677 Gene3D Ribonuclease Inhibitor 226 398 IPR032675 -
Vra9g0890 677 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 14 650 IPR044974 GO:0006952
Vra9g0890 677 Pfam NB-ARC domain 3 83 IPR002182 GO:0043531
Vra9g0890 677 Gene3D - 13 93 IPR042197 -
Vra9g0890 677 PRINTS Disease resistance protein signature 48 62 - -
Vra9g0890 677 PRINTS Disease resistance protein signature 287 303 - -
Vra9g0890 677 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 14 650 - -
Vra9g0890 677 SUPERFAMILY L domain-like 234 392 - -
Vra9g0890 677 SUPERFAMILY "Winged helix" DNA-binding domain 82 167 IPR036390 -
Vra9g0890 677 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 7 75 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0890 Vra-Chr9 10587511 10590357 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0890 8 354 WRKY Transcription Factor Family AT5G45050 25.984 8.20e-27 115
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0890 - - var:108346736 926.391