Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0888 ATGGATATCGCCTCATCATCATACAAACTATCACGGAAGTACGATGTGCTCATCAACTTCACTGGAGAAGACATCCACAGAAAATTTGTTTCTCATCTCAATTCTGTCCTCTCTACTGTTGGTCTCACCACTTTCCTTCATCACCACAATGCAGTGAAGTCATCTCATATCCAAGAACCTATTCTCAGCCGCTGTCGTGTAGCAATTGTTGTTTTCACCCAAACCTATTCTCAATCTGCTTGGTGTCTTAATCAGCTTCAACAAATCATCAACTGGCACGAAACTTATTGCCGACATGTTCTGCCCGTATATTATGAAATCCAGCCATCTGATGTACGTCTTCAGAAGGGCGACTTTGGAAAAGCCTTGAAGGAAACTGCACAACAAACATTTTCAAGACAAGAACTGGAGCATGGAATGTCTAGGTGGAGGCATGCACTTACCAAAGCTGCAAATTTCTTTGGATGGGATGAGAGCAATCACAGGAGTGATGCTGAACTAGTGGACAAAATTGTTAAGAGCATTATTAATTTACCAGTCTTGTCTGCTACTAAATTTCCAGTTGGATTACAATCCCAAGTGGAAGATCTGATTCGAACTATAAAAAATAAATCCAATGAAGTTTATATGATAGGGATAGGTGGAGAGGAAGGATCTGGTAAAACCACTCTTGCCAAAGCCATCTACAATCAAATTCATTGGAAATTCAATAAGAAAAGTTTCATTGAAAATATTTCACAAGTTAGCGACATAAGAGGGCAACTTCGTTTACAAGAAAAACTTCTTTTAGATGTCCTAAAACAAAAGGTGGAGATTCCTAACATTGATGTGGGAAGAAGTATCATTCGGGAAAGACTTTCTGGGAAAAGGGTGCTCATTGTACTTGATGATTTGCCTGCCAATAATGAACTGTTAGCACTATGGAATTATAGTCATAATTGGTTCGGTGAAGGAACTGTAATAATCATTACAATAACAGAGTTCGGCGTAATGAGTAAATGTCCAGTTGATTCTGTATTTCGGATAAAGCTAATGAACGAAGAGGAGTCCCTTGAGCTTCTTAGTTGGCACGCATTTAGAGAACCAAAACCAAAAGAAGAATACGAAGACCTTGCAAGAAGAGTAGTTAGTTATTGTGGAGGATTACCTCTAGCTCTTGAAGTCATTGGAAGTACTTTATTTGAAAAGATCAAAGAAGAATGGAACAATTTATTGTTTAAATTTCCGATCGCGATGGTTGACATTCATACTGTTCGAGAGACAATAAAAGTAAGCATCGAAGGTTCACTCAATGAAATAGAAAAAGATATATTCCTTGATGTATGTTGTTTCTTTGTTGGTGAGAGCAGAGCCTATGCTACGAAAATCCTAAATGGGTGTGGAGTAGACGCTGATATTGGAATAAGAGTTCTCATCCAACGTAACCTCATCAAAATTAATAAGAACAACAAATTTGGAATGCATCCTTTGGTACAAGAAATCGGAATAAAAATTATTTATGAAAATTCAGAAAAGGATCCTGGGAAGAACAGGCGATTGTGGTTTGATAAGGATGCAAAATATGTGCCAGAAACCTTGCAGTGGTTGCCTGTGGAACCACCTTCAGTTCGCATTGCCTTTGGAGAACCGATTCTAAATTCTGAGTACCTTCTTAAGAAGCTAAGATGGATCAGATTGCATGGGTTTTCTTCAGAATGTCTACCTAACAACTCTTATGAGGATGATTCAACAGCGATTGATTTAAAACGCAGTCTTCTTCGATTTCTCTGGAAAACACCCCAGGTTTTGAGATCCATAAAAGTCCTTAACCTCAGTCACTCCAAGTATTTAACTACAACCCCTGACTTTACCGGATTACCAAGTCTTGAATACCTCATTTTGAAATATTGTTCAAGATTGAGCAAAGTACACCAATCTATTGGATCACTCAATAGTCTTATACTGCTAAATTTGAAATACTGTACAAGTTTAAACAATCTTCCAACAGAGATATATGACTTGAAATCTTTAAGAACCTTCATTCTTTCTGGTTGTTCCAAGATTGACATAAAGGATAAAGATATAGCAAAGTTGGAATCCTTGATAACTCTAATTGCTGAAAATACAGCTGTGAAACTTGTTCCTTTTTCAATTGTAAGCTCAAAAAGCATTGGATATATATCCCTAAGTGGATTTGAGGGATTATCTCATAATCTTTTTCCTTCTATCATTCGGTCTTGGATGTCCCCAATAATGAATCCCATCTCTTATATTCATTTCTTTTGCATGGATATGGAGGATAATACGATTGATATTGCACCGTTGCTTAGCACCCTTGCAAATATTCGAAGTGTTTTGGTAGCATGTGACACCGATTTCCAATTATCTAAGCAAGTGAAAAATATTTTGGATGAATACTTTCCAAGTATTACAGAATCAGGAATTTCAAAGCAGCACTTGAGGTGTTCTTTGATTGGTGTTGGAGCATACCATCAACTCTTCAATGCTGTCAACGATAACATATATGAGGTATTGGCAAACAGTGAGTCTGGTGAAGTTTGTCTCCCAGCCGTCAATGATCCTTATTGTTTGGCCCATATGGGTGATGGACACTCTGTTTCTTTCATTGTGCCTGAAGATCGTTACATGAAAGGAATGACTTTGTGTGTTGTTTATTTATCAAACCCTGAAGCCATTGAACCTCAATTCACTACTGTCATAGTTATTAACTACACAAAGTGTACATTCCAGATACACAACCATGGCACAGTCATTTCCTTTAAAGATGAAGATTGGCATGACATAATTTCAAATTTAGAATCTGGAGACAATGTGGAGATTTTTGTGAATTTCGGAAATGGATTGGTGGTCAAGAACACCACGGTGTATTTGATTTGTGGTGAATCAAAGAATTTGAGAAAAGCGTTTGAGCCAAAGAAACATGGTCTCATTAGATTCGTAAAGAAAGTTGTAATGTGA 2958 0.3736 MDIASSSYKLSRKYDVLINFTGEDIHRKFVSHLNSVLSTVGLTTFLHHHNAVKSSHIQEPILSRCRVAIVVFTQTYSQSAWCLNQLQQIINWHETYCRHVLPVYYEIQPSDVRLQKGDFGKALKETAQQTFSRQELEHGMSRWRHALTKAANFFGWDESNHRSDAELVDKIVKSIINLPVLSATKFPVGLQSQVEDLIRTIKNKSNEVYMIGIGGEEGSGKTTLAKAIYNQIHWKFNKKSFIENISQVSDIRGQLRLQEKLLLDVLKQKVEIPNIDVGRSIIRERLSGKRVLIVLDDLPANNELLALWNYSHNWFGEGTVIIITITEFGVMSKCPVDSVFRIKLMNEEESLELLSWHAFREPKPKEEYEDLARRVVSYCGGLPLALEVIGSTLFEKIKEEWNNLLFKFPIAMVDIHTVRETIKVSIEGSLNEIEKDIFLDVCCFFVGESRAYATKILNGCGVDADIGIRVLIQRNLIKINKNNKFGMHPLVQEIGIKIIYENSEKDPGKNRRLWFDKDAKYVPETLQWLPVEPPSVRIAFGEPILNSEYLLKKLRWIRLHGFSSECLPNNSYEDDSTAIDLKRSLLRFLWKTPQVLRSIKVLNLSHSKYLTTTPDFTGLPSLEYLILKYCSRLSKVHQSIGSLNSLILLNLKYCTSLNNLPTEIYDLKSLRTFILSGCSKIDIKDKDIAKLESLITLIAENTAVKLVPFSIVSSKSIGYISLSGFEGLSHNLFPSIIRSWMSPIMNPISYIHFFCMDMEDNTIDIAPLLSTLANIRSVLVACDTDFQLSKQVKNILDEYFPSITESGISKQHLRCSLIGVGAYHQLFNAVNDNIYEVLANSESGEVCLPAVNDPYCLAHMGDGHSVSFIVPEDRYMKGMTLCVVYLSNPEAIEPQFTTVIVINYTKCTFQIHNHGTVISFKDEDWHDIISNLESGDNVEIFVNFGNGLVVKNTTVYLICGESKNLRKAFEPKKHGLIRFVKKVVM* 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0888 985 Gene3D Ribonuclease Inhibitor 544 802 IPR032675 -
Vra9g0888 985 Pfam TIR domain 13 183 IPR000157 GO:0007165
Vra9g0888 985 SUPERFAMILY "Winged helix" DNA-binding domain 418 519 IPR036390 -
Vra9g0888 985 Gene3D - 8 177 IPR035897 -
Vra9g0888 985 Gene3D - 344 426 IPR042197 -
Vra9g0888 985 SMART till_3 13 153 IPR000157 GO:0007165
Vra9g0888 985 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 17 958 - -
Vra9g0888 985 SUPERFAMILY L domain-like 548 738 - -
Vra9g0888 985 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 17 958 IPR044974 GO:0006952
Vra9g0888 985 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 171 440 IPR027417 -
Vra9g0888 985 ProSiteProfiles TIR domain profile. 12 179 IPR000157 GO:0007165
Vra9g0888 985 Pfam NB-ARC domain 192 408 IPR002182 GO:0043531
Vra9g0888 985 PRINTS Disease resistance protein signature 210 225 - -
Vra9g0888 985 PRINTS Disease resistance protein signature 285 299 - -
Vra9g0888 985 PRINTS Disease resistance protein signature 379 393 - -
Vra9g0888 985 PRINTS Disease resistance protein signature 594 610 - -
Vra9g0888 985 Gene3D - 178 338 IPR027417 -
Vra9g0888 985 SUPERFAMILY Toll/Interleukin receptor TIR domain 4 156 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0888 Vra-Chr9 10573339 10577274 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0888 8 681 WRKY Transcription Factor Family AT4G12020 27.901 9.25e-64 234
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0888 - - var:108346736 1391.71