Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0887 ATGAAGCCATCTTCTCTTTGGTTACTTGCTTTTTGGTTTATATATGTTCCCCTGTTTTTCAACTTTACATGCAACTCCAAACACAATGTTTTTGCTCTAGAAAATGAGATCGATCATATGGCATTAATCAAATTCAAAGAATCAATATCGAGTGATCCAAATCGGATCTTGCTTTCCTGGAATACTTCTACTCACTTTTGTAATTGGTATGGAATCACATGCCATCCCACACTTCCAAGGGTTACTGAGCTGAACTTGCAAGGGCACAAGTTGAAAGGGTACATATCTCCTCAAATAGGTAATCTCTCTTACATCAGAAAATTTGTACTTGGAAACAACAGTTTCTATGGCAATTTACCACTCGAAGTGGGAAGATTGTCCCAACTACAGAAATTCAATGTTGAAAATAACACATTGGGAGGAGAAATTCCTTTAAATTTGACGCATTGTACTCAACTCAAAATTTTAAATTTGTATGGAAACAATCTGAAAGGAAAAATACCTATTACAATCGGATTGCTCCGGAACATTCAGTTTTTGNACTTTGGTCAAAATCAGTTAACAGGAGAAATTCCATCTTCCATTGGGAATCTTTCTTCAATAACATATCTATCACTTACTTTTAACAATTTAGAGGGAGATATTCCACCAGAAATATGTCATCTCAAAAGCTTAACTATTCTAGCTTTAGGTATCAACAAACTGAGTGGATCAATTCCTTCCTGTCTTTATAATATGTCATCTCTTACTGGAATCTCAGTCACTGAAAATCAACTTAGTGGCTCTCTTCCACCCAACATGTTCCACACCCTCCACAATCTTCAGGGACTTACACTTTCTAACAATCAATTCTCAGGTCCAATCCCACCTTCCATTGCAAATGCATCCAGTCTTTCACTCCTTGATCTCTCTAAGAACCATTTTGTGGGAAGAATTCCAGGTCTTGGAAAACTACATGAACTTTATTTCCTAAGCTTGGGTCAAAACAATTTAGGTTACAATTCAACTAATGATTTGGAGTTTTTAAAATCATTGGTAAATTGTACTAAGTTGGAAATATTAGCTCTATCTTACAATAGTTTGGGAGGTCAATTATCAAATTCTTTGGGAAATTTGTCGACTCAACTAAGTCAACTATATCTCGGATACAACGAGATATCTGGAGAAATCCCTGAGGCAATAGGAAATTTAATTGGCTTAACTCTCTTGACAATCTACAAGAACCACTTTGATGGTATTATCCCAACAACTTTTGGAAAGTTTAAAATGCTTCGAGTGTTAGGATTAGGGGGAAACAAGTTGTCAGGAAATATAGAACCCTTCATTGGAAACTTGAGTCAATTGTTTTATTTGAATCTACGAGAAAATCGATTTGAAGGGAGTATTCCTCCAAGTATAGGCAATTGTCAACTGCTACAACATTTTGATCTTTCAGAGAACCATCTATCAGGAACCATACCACTAGAGCTTTTTAATCTTACCTCTCTATTTGACAATTTGGATTTGTCATATAATTCCTTGAGTGGTAGTATACCAGATGAAGTGGGAAATATAAACAACATTGACTTTCTAGATATGTCAAACAATAATATATCTGGTCACATTCCTCTTGGTGTTGGAAAATGCATAATGTTAGAGTACCTCTATTTGCAAGGGAATTCTTTACAAGGAATCATACCATCTTCTTTGGCATCACTTAAAAGCATTATATTTTTGGACCTGTCACAAAACCATTTGTCNGGATCAATTCCAAATTTCCTGCAAAACCTTTCTTTCNTACAATATTTGAATGTATCTTTTAATATNTTGGAAGGTGAGGTACCCACTGAAGGTGTCTTTCGGAATGTAAGTGCATTGGGGGTGATTGGAAACAGTAAGCTTTGTGGAGGTATTTCTGAATTGCATCTGCCACCATGCCCTGTTAAAATTAAGAAACATGCAAAACACCACAAGTTCAGATTGATAGTGGTGACATTAAGTGTAGTTGTTTCTCTCATTGTACTATTATCTGCCTTAACTATCTATTGGTCGAGGAAAAAGGGAAAGAAACCTTCCCTTAATTCATCAACAATTCACCAATTGGCTAAAGTTTCCTACCAAAGCTTGTACAATGGAACTGATGGGTTCTCAACTACAAACTTGATAGGGAGTGGGAATTTCAGTTCTGTCTACAAAGGAACTCTTGAGCTCNAAGACAGAGTTGTNGCNGTAAAGGTTCTAAACCTGCAAAGAAAAGGAGCTCACAAGAGCTTCGTGGCAGAATGTAATGCACTAAAAAATATTAAGCATCGAAATCTTGTTCAGATTTTGACATGTTGTTCCAGCACAGATTATAAAGGTCAAGAATTCAAAGCTTTGATCTTTGAGTACATGAGAAATGGAAGCCTGGAGCAATGGTTGCATCCTACCACAACAAGTGTTGAGCACCCAAGAACATTGAGCCTTAAACAAAGATTAAGTATAATGATTGACGTAGCTTCTGCATTACAATATCTTCATCATGAATGTGAGCAGTCGATCATTCATTGTGATTTAAAGCCAAGCAATGTCCTTCTTGATGATGAAATGATTGCTCATGTAAGTGATTTTGGCATAGCAAGACTTCTCTCAACAATCCAAGGTATTACCTCCAAACAATCAAGTACACTTGCAATAAAGGGGACTGTTGGCTATGCTCCTCCAGAGTATGGAATGGGTGCTGAAGTGTCAACTTCTGGCGACATGTACAGCTTTGGAATTCTTTTGCTGGAAATGCTTACTGGGAGAAGACCTACAGATGAAATGTTTGAAGATGGTCAAAATATTTGTAACTTTGTTGCAATTTCATTTCCCAGTAAACTTTTTCAAATTTTGGATCAGCGACTTATTCCAATTGAGGAAAATGATTGGAATCTTAATCCAAATGTTGAAAAGTGCTTAGTTTCACTTTTTAAAATTGGTCTTGCCTGTGCTGTGGAATCACCAAAAGACAGAATGGATGTGGTTGATGTCAGCAGGGAGCTTCATCGAATTCAAAATGCCTTTTTTGGTCGAGGCTCTGTTTTGGGAAATGATCCTTCAATCTTCTTATTGAGTCAAGGTATTGGTAATTTTGAAGGTTGA 3102 0.3646 MKPSSLWLLAFWFIYVPLFFNFTCNSKHNVFALENEIDHMALIKFKESISSDPNRILLSWNTSTHFCNWYGITCHPTLPRVTELNLQGHKLKGYISPQIGNLSYIRKFVLGNNSFYGNLPLEVGRLSQLQKFNVENNTLGGEIPLNLTHCTQLKILNLYGNNLKGKIPITIGLLRNIQFLXFGQNQLTGEIPSSIGNLSSITYLSLTFNNLEGDIPPEICHLKSLTILALGINKLSGSIPSCLYNMSSLTGISVTENQLSGSLPPNMFHTLHNLQGLTLSNNQFSGPIPPSIANASSLSLLDLSKNHFVGRIPGLGKLHELYFLSLGQNNLGYNSTNDLEFLKSLVNCTKLEILALSYNSLGGQLSNSLGNLSTQLSQLYLGYNEISGEIPEAIGNLIGLTLLTIYKNHFDGIIPTTFGKFKMLRVLGLGGNKLSGNIEPFIGNLSQLFYLNLRENRFEGSIPPSIGNCQLLQHFDLSENHLSGTIPLELFNLTSLFDNLDLSYNSLSGSIPDEVGNINNIDFLDMSNNNISGHIPLGVGKCIMLEYLYLQGNSLQGIIPSSLASLKSIIFLDLSQNHLSGSIPNFLQNLSFXQYLNVSFNXLEGEVPTEGVFRNVSALGVIGNSKLCGGISELHLPPCPVKIKKHAKHHKFRLIVVTLSVVVSLIVLLSALTIYWSRKKGKKPSLNSSTIHQLAKVSYQSLYNGTDGFSTTNLIGSGNFSSVYKGTLELXDRVVAVKVLNLQRKGAHKSFVAECNALKNIKHRNLVQILTCCSSTDYKGQEFKALIFEYMRNGSLEQWLHPTTTSVEHPRTLSLKQRLSIMIDVASALQYLHHECEQSIIHCDLKPSNVLLDDEMIAHVSDFGIARLLSTIQGITSKQSSTLAIKGTVGYAPPEYGMGAEVSTSGDMYSFGILLLEMLTGRRPTDEMFEDGQNICNFVAISFPSKLFQILDQRLIPIEENDWNLNPNVEKCLVSLFKIGLACAVESPKDRMDVVDVSRELHRIQNAFFGRGSVLGNDPSIFLLSQGIGNFEG* 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0887 1033 Gene3D Ribonuclease Inhibitor 35 314 IPR032675 -
Vra9g0887 1033 SUPERFAMILY L domain-like 37 331 - -
Vra9g0887 1033 PANTHER OS04G0122200 PROTEIN 24 1010 - -
Vra9g0887 1033 Gene3D Ribonuclease Inhibitor 315 648 IPR032675 -
Vra9g0887 1033 Gene3D Transferase(Phosphotransferase) domain 1 791 1010 - -
Vra9g0887 1033 ProSitePatterns Protein kinases ATP-binding region signature. 715 738 IPR017441 GO:0005524
Vra9g0887 1033 PANTHER LRR RECEPTOR-LIKE KINASE 24 1010 - -
Vra9g0887 1033 SMART serkin_6 709 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0887 1033 ProSitePatterns Serine/Threonine protein kinases active-site signature. 840 852 IPR008271 GO:0004672|GO:0006468
Vra9g0887 1033 Pfam Protein kinase domain 711 978 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0887 1033 Pfam Leucine Rich Repeat 545 566 IPR001611 GO:0005515
Vra9g0887 1033 ProSiteProfiles Protein kinase domain profile. 709 1009 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra9g0887 1033 SMART LRR_typ_2 566 589 IPR003591 -
Vra9g0887 1033 SMART LRR_typ_2 271 295 IPR003591 -
Vra9g0887 1033 SMART LRR_typ_2 493 518 IPR003591 -
Vra9g0887 1033 SMART LRR_typ_2 126 150 IPR003591 -
Vra9g0887 1033 SMART LRR_typ_2 198 222 IPR003591 -
Vra9g0887 1033 SMART LRR_typ_2 445 469 IPR003591 -
Vra9g0887 1033 SMART LRR_typ_2 246 270 IPR003591 -
Vra9g0887 1033 Pfam Leucine rich repeat 224 284 IPR001611 GO:0005515
Vra9g0887 1033 SUPERFAMILY Protein kinase-like (PK-like) 683 1001 IPR011009 -
Vra9g0887 1033 SUPERFAMILY L domain-like 374 629 - -
Vra9g0887 1033 Gene3D Phosphorylase Kinase; domain 1 689 790 - -
Vra9g0887 1033 Pfam Leucine rich repeat N-terminal domain 41 74 IPR013210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0887 Vra-Chr9 10535696 10539544 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0887 35 1009 Receptor kinase-like Gene Family AT3G47570 44.828 0.0 812
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XII-1 Vra9g0887 Pkinase 1.9e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0887 - - vun:114166412 1509.97