Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0884 ATGGAGTTTGCATCTTCTTCTTTATCATCATCATCATCCTTCTTAACATCACAACCCCATTTCATACACGATGTGTTCATCAACTTTGGTGGAGAAGAAATCGGTCGAAGGTTTGTTTCTCATCTCCACTCTGTCCTTTTACAAGCTCAAGTCAAAACTACTATTAGCCAGGAGAATCTGCAAGAAGGAATGAAGCTGGAAGAGCAGATTCGAGCAATAGGAGGCACTAAGATTACGATAATTGTTTTCTCCAAATCATACGCTGAATCTACCTGCTGTCTTCTTGAGCTTGAAAAAATCATTGAATGCCACCAAACTTTCGGCCAAATACTTGTGCCCGTATTTTACGAGATTAACCCATGGGTTGTACGTCATCAGATGCATGATTTTGGGAAAGCGTTGGAAGAAGCTGCACACAAAAGCTATTCAGGAGAACAAGTGGAACATGCGTTGTCCAAGTGGAGGCGTGCACTCACCGCAGCTGCAGGTATGACTGGTTGGGAGTTCAGAAATTACAGGCATGATGCTGAACTTGTAGACAAAATTGTTAACCGCGTTAAAACATTACTGGACTATAAAGACTTGTTTATTACCGAATATCCAGTTGGATTAGAGTCCCGCGTGGAAGACGTGATTAAATGTATTGAAAATCAATCCACCAAAGTGTGTATGATAGGAATATGGGGAATGAGAGGATCAGGTAAAACGACCATAGCCAAAGCAATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTATTGAGAATAGTGGTTATGAAGGGTATGTTGCTATGCAAGAAAATCTTCTTTCTGATGTCCTCAAATCCAAGTTGGAGGTGAAAAACGTTCAGATGGGAAGAACTAAGATCCAGAATGGATTTTCTCGAAAAAAGTTGCTCATTGTGCTTGATGACGTGAATCACATTGGCCAATTAGAAAACCTATGCGGGAGTCGTGAGTGGTTCGGTCAAGGAACTGTGATAATCATTACATCTAAAGATATTCACTTGCTGAACCAATTCAGAAGTAATTATGTTTATAAAATGCATCTTTTGAACGAAAATGAGTCACTTGAGCTTTTTAGTTGGCATGCATTTAGAGATGCAATACCAGAAAAAGAATGGAGTGTGGGAAAGTGTATTGTTGAAAAACTCGCAAGAAACGTAGTTGTTTATTGTGGAGGACTACCGCTAGCTCTTGAGTTCCTTGGTTCCTATTTAGGTGATAGGACAATAGAAGTGTGGGAAAGTGTATTGTTGAAACTAAAAAGAAATCCCCCGAATGAACCTCTGAGCGTATTAAAAGTAAGTTTTGAAGATTTACGTGATACGGAAAAGGATATATTTCTGGATGTATGTTGTTTCTTTATTGGCAAAGACAGAGACTATGTGACAGAGATATTAAATGGGTGTGGACTACATGCTGATATTGGAATAACAGTTCTCATAGAGCGTGGCCTCATAAAAGTTGAAAGGAACAACAAACTTCAAATGCATCCTTTGTTACAAGAGATGGCAAGAGAAATTATTCGTCAAGAATGCCTAGAGAAACCAGGGAAAAGAAGTCGATTGTGGTTTCACGATGACGTAGAAGATGTACTGAAAGAGAATAGTGGAACAGAATCTATATTGTCCCTGAAACTTGATTTCGGCATTGCAGATTGCTTTGAAGCTCATGCTTTCAAGAAAATGAAGAGACTAAGACTGCTACAACTTGATCATGTACAACTTAGTGGAGATTTTGGGAACATTTCTGATCAACTGAGATGGATTTGTTGGCGAGGGTTTCCATATAAAGACTTTCCAAGAAACTTTCATATGCAAAATGTAATTGCAATGGATTTAAAGCATAGTCTTCTTCTCCATCTCGGCTGGCAACGAGGCGTGGTTTTAGAGCGGTTAAAATTCCTTAATCTTAGTCACTCCAAATACCTGATAGGAACACCTAACTTTTCGAGACTACCAAGTCTTGAACAGCTCATTCTAAAAGATTGTCCAAGTTTGCTCAAGGTACACCAATCCATTGCTGATCTCTCCAATATAGTATTGATAAATTTGAAAGATTGCACAAGTCTAAGCTATCTCCCAAGAGAGATATATAAGTTGAGATCTTTAAAAACTCTCATCCTATCTGGTTGTTCGAAGCTTGGCCCTATAGATATAAAACAGGTGAAATCCTTGGTAAATATAATTGCTTAA 2205 0.385 MEFASSSLSSSSSFLTSQPHFIHDVFINFGGEEIGRRFVSHLHSVLLQAQVKTTISQENLQEGMKLEEQIRAIGGTKITIIVFSKSYAESTCCLLELEKIIECHQTFGQILVPVFYEINPWVVRHQMHDFGKALEEAAHKSYSGEQVEHALSKWRRALTAAAGMTGWEFRNYRHDAELVDKIVNRVKTLLDYKDLFITEYPVGLESRVEDVIKCIENQSTKVCMIGIWGMRGSGKTTIAKAIYNRIYREFIGKSFIENSGYEGYVAMQENLLSDVLKSKLEVKNVQMGRTKIQNGFSRKKLLIVLDDVNHIGQLENLCGSREWFGQGTVIIITSKDIHLLNQFRSNYVYKMHLLNENESLELFSWHAFRDAIPEKEWSVGKCIVEKLARNVVVYCGGLPLALEFLGSYLGDRTIEVWESVLLKLKRNPPNEPLSVLKVSFEDLRDTEKDIFLDVCCFFIGKDRDYVTEILNGCGLHADIGITVLIERGLIKVERNNKLQMHPLLQEMAREIIRQECLEKPGKRSRLWFHDDVEDVLKENSGTESILSLKLDFGIADCFEAHAFKKMKRLRLLQLDHVQLSGDFGNISDQLRWICWRGFPYKDFPRNFHMQNVIAMDLKHSLLLHLGWQRGVVLERLKFLNLSHSKYLIGTPNFSRLPSLEQLILKDCPSLLKVHQSIADLSNIVLINLKDCTSLSYLPREIYKLRSLKTLILSGCSKLGPIDIKQVKSLVNIIA* 735
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0884 734 Gene3D Ribonuclease Inhibitor 545 732 IPR032675 -
Vra9g0884 734 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 191 453 IPR027417 -
Vra9g0884 734 Gene3D - 18 195 IPR035897 -
Vra9g0884 734 CDD AAA 202 336 - -
Vra9g0884 734 Gene3D - 353 444 IPR042197 -
Vra9g0884 734 SMART till_3 22 164 IPR000157 GO:0007165
Vra9g0884 734 PRINTS Disease resistance protein signature 224 239 - -
Vra9g0884 734 PRINTS Disease resistance protein signature 295 309 - -
Vra9g0884 734 PRINTS Disease resistance protein signature 395 409 - -
Vra9g0884 734 PRINTS Disease resistance protein signature 702 718 - -
Vra9g0884 734 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 724 - -
Vra9g0884 734 Pfam NB-ARC domain 205 427 IPR002182 GO:0043531
Vra9g0884 734 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 724 IPR044974 GO:0006952
Vra9g0884 734 Gene3D - 196 349 IPR027417 -
Vra9g0884 734 Pfam TIR domain 23 187 IPR000157 GO:0007165
Vra9g0884 734 ProSiteProfiles TIR domain profile. 21 190 IPR000157 GO:0007165
Vra9g0884 734 SUPERFAMILY L domain-like 512 724 - -
Vra9g0884 734 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 167 IPR035897 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0884 Vra-Chr9 10472885 10475579 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0884 23 719 WRKY Transcription Factor Family AT4G12020 30.055 1.67e-77 270
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0884 - - vun:114165946 1044.26