Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0879 ATGGAGTTCGCATCTTCTTCTTTATCATCTTCATCTTCATCCTTCTTAACATCAGAACCCCATTTCATACACGATGTGTTCATAAACTTTGGTGGAGAAGACATCGGTAGAAGGTTTGTGTCTCATCTCCACTCTGTCCTTTTACAAAATCAAGTCAAAACTTTTATTAGCCAGCAGAATCTGCATGAGGGAATGGAGCTGGAAGAGCAGATGCGAGGAATAGGAGGTACTAAGATTACAATAATTGTTTTCTCCAAATCATACGCTGAATCTGCTTGCTGTCTTCTTGAGCTTGAAAAAATCATTGAATGCCCCCAAACTTTTGGCCAAATTGTTTTGCCCGTATTTTACGAAATTGACCCATTGGATGTACGTCATCAAAACGATGATTTTCGGAAAGCATTGGAAGAAACTGCAGGCAGAAGNTATGCGTTGTACAAGTGGAACCGTGCACTCAACACAGCTGCGAGTATGACTGGTTGGGATGTCAGAAATTTCAGACACGATGCTGAACTTGTAGACGTAATTGTTAACCGCGTTAACACATTACTGGACTATAAAGACTTATTTATTACCGAATATCCTGTTGGATTAGAGTCCCGCGTGGAAGACGTGATTAAATGTATTAAAAATCAAACTACCAAAGTGTGTATGATAGAAATATGTGGAAGGGAAGGATCAGGTAAAACAACTTTAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTATTCAGAATATTCGCTATGAAGGGTATGTTGCTTTGCAAGAAAATCTTCTTTCTGATGTCCTAATATCCAAGCCGGGGGTGAAAAGCGTTGGGATGGGAAGAACTATGGTCGAGAATGGCTTTTCTCGAGAAAAGTTGCTCATTGTACTGGATGATGTGAATGACTTTGACCAATTAAGAAACCTATGCGGGAGTCGTGAATGGTTCGGTCAAGGAACTGTCATAATCGTTACTAGTAGAGATTTTCACTTGCTGAACCAATTCAGAGATAATTATGTTTATAAAATGGATATTTTGAACGAAAATGAGTCACTTAAGCTTTTTAGTTGGCATGCATTTAGAGATGCAATACCAGAAAAAGAATGGTATGAACTCGCAAGAAACGTCGTTGTTTATTGTGGAGGACTACCGCTAGCTCTTGAGTTCCTTGGTTCCTATTTATGTGATAGGACAATTGAAGTGTGGGAAAGTGTATTATTGAAACTACAAAGAATTCCCCCGAATGAACTTCTAAGCGTATTAAAAATAAGTTTTGAAGATTTACGTGACACGGAAAAGGATATATTTCTGGATGTATGTTGTTTCTTTATTGGCAAAGAAAGAGAGTATGTGACAGAGATATTAAATGGGTGTGGACTACATGCTGATATTGGAATAACACTTCTCATAGAACGTGGCCTCATAAAAGTTGAAAGCAACAACAAACTTCAAATGCATCCTTTGCTACAAGAGATGGGAAGAGAAATTATTCGTCAAGAATGCCCAGAGAAACCGGGGAAAAGGAGTCGATTGTGGTTTCCGGATGATGTAGAAGATGTACTGAATAAGAATACTGGGACAAAAGCTATATTGTCCCTGAAACTTCATTCCAGCATTGGAGATTGGTTTGAAGCTCATGCTTTCAAGGAAATGAAGAGACTAAGACTGCTACAACTTGATAATGTAAAACTTAGTGGAAATTATGGGCACATTTCTAAACAACTGAGATGGATTTGTTGGCGAGGGTTTCCTTATAGATACATTCCAAACAACTTTAATTTGGAAAATGTAATTGCAATGGATTTAAAGCATAGTCATCTTCAACTCATTTGGAAACAACCACTCTGGAAAAAACCCCAGGTTTTAGAGCGGTTAAAATTCCTTAATCTTAGTCACTCCAAATACTTGAAAGAAACACCAGACTTTCGGGGATTACCAAGTCTTGAACAGCTCATTTTAAAAGATTGTCCAAGTTTGCTCAAGGTACACCAATCCATTGCTGATCTCTCCAATATAGTAGTGATAAATCTGAAGGATTGCACAAGTCTAAGCTATCTCCCAATAGAGATATATAAGTTGAGATCTTTAAAAACTCTCATCCTATCTGGTTGTTCGAAGCTTGACTCATTGGAAAATCCTTTGAAACTATAA 2157 0.3778 MEFASSSLSSSSSSFLTSEPHFIHDVFINFGGEDIGRRFVSHLHSVLLQNQVKTFISQQNLHEGMELEEQMRGIGGTKITIIVFSKSYAESACCLLELEKIIECPQTFGQIVLPVFYEIDPLDVRHQNDDFRKALEETAGRXYALYKWNRALNTAASMTGWDVRNFRHDAELVDVIVNRVNTLLDYKDLFITEYPVGLESRVEDVIKCIKNQTTKVCMIEICGREGSGKTTLAKAIYNRIYREFIGKSFIQNIRYEGYVALQENLLSDVLISKPGVKSVGMGRTMVENGFSREKLLIVLDDVNDFDQLRNLCGSREWFGQGTVIIVTSRDFHLLNQFRDNYVYKMDILNENESLKLFSWHAFRDAIPEKEWYELARNVVVYCGGLPLALEFLGSYLCDRTIEVWESVLLKLQRIPPNELLSVLKISFEDLRDTEKDIFLDVCCFFIGKEREYVTEILNGCGLHADIGITLLIERGLIKVESNNKLQMHPLLQEMGREIIRQECPEKPGKRSRLWFPDDVEDVLNKNTGTKAILSLKLHSSIGDWFEAHAFKEMKRLRLLQLDNVKLSGNYGHISKQLRWICWRGFPYRYIPNNFNLENVIAMDLKHSHLQLIWKQPLWKKPQVLERLKFLNLSHSKYLKETPDFRGLPSLEQLILKDCPSLLKVHQSIADLSNIVVINLKDCTSLSYLPIEIYKLRSLKTLILSGCSKLDSLENPLKL* 719
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0879 718 Gene3D Ribonuclease Inhibitor 524 717 IPR032675 -
Vra9g0879 718 SUPERFAMILY "Winged helix" DNA-binding domain 418 523 IPR036390 -
Vra9g0879 718 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 27 713 - -
Vra9g0879 718 SMART till_3 23 158 IPR000157 GO:0007165
Vra9g0879 718 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 27 713 IPR044974 GO:0006952
Vra9g0879 718 PRINTS Disease resistance protein signature 218 233 - -
Vra9g0879 718 PRINTS Disease resistance protein signature 289 303 - -
Vra9g0879 718 PRINTS Disease resistance protein signature 382 396 - -
Vra9g0879 718 PRINTS Disease resistance protein signature 693 709 - -
Vra9g0879 718 Pfam TIR domain 24 180 IPR000157 GO:0007165
Vra9g0879 718 Gene3D - 17 186 IPR035897 -
Vra9g0879 718 SUPERFAMILY L domain-like 500 713 - -
Vra9g0879 718 Pfam NB-ARC domain 199 413 IPR002182 GO:0043531
Vra9g0879 718 Gene3D - 188 342 IPR027417 -
Vra9g0879 718 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 186 440 IPR027417 -
Vra9g0879 718 SUPERFAMILY Toll/Interleukin receptor TIR domain 18 161 IPR035897 -
Vra9g0879 718 ProSiteProfiles TIR domain profile. 22 184 IPR000157 GO:0007165
Vra9g0879 718 Gene3D - 347 431 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0879 Vra-Chr9 10414435 10417147 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0879 24 709 WRKY Transcription Factor Family AT4G12020 29.437 4.64e-79 275
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0879 - - vun:114165946 1033.09