Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra9g0878 ATGGAGTTTGCATCTTCATCCTTCTTAACATCAGAACCCCATTTCATACACGATGTGTTCATCAACTTTGGTGGAGAAGACATCGGTAGAAGATTTGTTTCTCATCTACACTCTGTCCTTTTACAAAATCAAGTCAAAACTTTTATTAGCCAGGAGAATCTGCATGAGGGAATGAAGCTGGAAGAGCACATGAGGGCAATAGGGCACACTAAGATTACAATAATCGTTTTCTCCAAATCATACGCTGAATCTATCTGGTGTCTTCTTGAGCTTGAAAAAATCATTGAATGCGACGAAACATTTGGCCAAATAGTTCTACCCTTATTTTACGAGATTGACCCATCGGATGTACGTCATCAGAAGGATGATTTTGGAAAAGCTTTGGAAGAAGCTGCACACAAAAGTTATTCAGGAGAACAACTGGAACATGCGTTGTCCAAGTGGAGCCGTGCACTCACCACAGCTGCACGAATCACCGGTTGGGATTTCAGAAATTTCAGACATGATGCTGAACTTGTGGAGCGAATTGTTAGCCACGTTAAGACATTACTGGACTATAAAGACTTGTCTATTACCCAATATCCTGTTGGATTAGAGTCCCAGGTGGAAGACGTGATTAAATGTATTGAAAATGAATCCAGCAAAGTGTGTATGATAGGAATATGGGGAATGGGAGGATCAGGTAGAACAACCCTAGCCAAAGCCATCTACAATCGAATTTATCGTGAATTCATTGGTAAGAGTTTTATTGAGAATATTGGTGAAGTTTGGGATTCAAAAATTGAAAGGTATGTTGCTTTGCAAGAAAATCTTCTTTCTGATGTCCTAAAATCCAAGTTGGAGGTGAAAAGCGTTGGGATAAGAAGAACTATGATCCAGAATGGAATTTCTCGGAAAAAGTTGCTCATTGTACTTGATGATGTCAATGAAATTGGCCAATTAAAAAGCCTATGTGGGAGTCGTGAATGGTTCGGTCAAGGAACTGTGATAATCCTTACTACTAGAGATAAACACTTGCTGAACCAACACTTAGTTGATTATGTTTATCAAATGGATCGTTTGAACGAAAATGAGTCACTTGAGCTTTTTAGTTGGCATGCATTTAGAGATGCAATACCAAAAAAAGAATGGAGTGAACTTGCAAGAAACGTCATTGTTTATTGTAGAGGACTACCACTAGCTCTTCAGTTCCTTGGTTCTTATTTATGTGATAAGACAATAGAAGTGTGGGAAAGTGTATTGAGAGAATTACAAAGAAATCCCCCGAATGAACTTCTGAACTTATTAAATATGAGTTTTGACGGTTTACGTGATACTGAAAAGGATATATTTCTTGATGTATGTTGTTTCTTTAAAGGCAAAGAAAAAGACTATGTGACAGAGATATTAAATGGGTGTGGACTACATGCTGATATTGGAATAACACTTCTCATAGATCGTGGCCTCATAAAAGTTGAAAGGAACAACAAACTTGAACTGCACCCTTTGTTACGAGACATGGGAAGACAAATTATTCATCAAGAATGCTCAAAGGAACCGGGGAAAAGAAGTCGATTGTGGTTGCAGGATGACGTAAAAGATGTATTGAACGAGAATACTGGGACAGAAGCTATCCAGGGATTGTCCTTGAAACTGCATTCAAGAAGAAGAGATGGCTTTGAAGCTCATGCTTTCAAGAAAATGAAGAGACTAAGATTGCTACAACTTGATCATGTACAACTTAGTGGAGATTTTGGGAACATTTCTGAAGAACTGAGATGGATTTGTTGGCGAGGGTTTCCATATGAACACATTCCAAGCAACTTTCATTTGCAAAATGCAATTGCAATAGATTTAAAGCACAGTCATCTTCAACTCCTCTGGAAACAACCCCCAGGTTTTAGAGCGGTTAAAATTCCTTAA 1902 0.3838 MEFASSSFLTSEPHFIHDVFINFGGEDIGRRFVSHLHSVLLQNQVKTFISQENLHEGMKLEEHMRAIGHTKITIIVFSKSYAESIWCLLELEKIIECDETFGQIVLPLFYEIDPSDVRHQKDDFGKALEEAAHKSYSGEQLEHALSKWSRALTTAARITGWDFRNFRHDAELVERIVSHVKTLLDYKDLSITQYPVGLESQVEDVIKCIENESSKVCMIGIWGMGGSGRTTLAKAIYNRIYREFIGKSFIENIGEVWDSKIERYVALQENLLSDVLKSKLEVKSVGIRRTMIQNGISRKKLLIVLDDVNEIGQLKSLCGSREWFGQGTVIILTTRDKHLLNQHLVDYVYQMDRLNENESLELFSWHAFRDAIPKKEWSELARNVIVYCRGLPLALQFLGSYLCDKTIEVWESVLRELQRNPPNELLNLLNMSFDGLRDTEKDIFLDVCCFFKGKEKDYVTEILNGCGLHADIGITLLIDRGLIKVERNNKLELHPLLRDMGRQIIHQECSKEPGKRSRLWLQDDVKDVLNENTGTEAIQGLSLKLHSRRRDGFEAHAFKKMKRLRLLQLDHVQLSGDFGNISEELRWICWRGFPYEHIPSNFHLQNAIAIDLKHSHLQLLWKQPPGFRAVKIP* 634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra9g0878 633 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 161 IPR035897 -
Vra9g0878 633 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 20 619 IPR044974 GO:0006952
Vra9g0878 633 PRINTS Disease resistance protein signature 218 233 - -
Vra9g0878 633 PRINTS Disease resistance protein signature 295 309 - -
Vra9g0878 633 PRINTS Disease resistance protein signature 388 402 - -
Vra9g0878 633 PRINTS Disease resistance protein signature 559 575 - -
Vra9g0878 633 Gene3D - 353 437 IPR042197 -
Vra9g0878 633 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 20 619 - -
Vra9g0878 633 ProSiteProfiles TIR domain profile. 15 184 IPR000157 GO:0007165
Vra9g0878 633 Pfam TIR domain 17 183 IPR000157 GO:0007165
Vra9g0878 633 Gene3D - 184 347 IPR027417 -
Vra9g0878 633 Gene3D - 10 183 IPR035897 -
Vra9g0878 633 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 446 IPR027417 -
Vra9g0878 633 Pfam NB-ARC domain 199 421 IPR002182 GO:0043531
Vra9g0878 633 SUPERFAMILY "Winged helix" DNA-binding domain 424 529 IPR036390 -
Vra9g0878 633 SMART till_3 16 158 IPR000157 GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra9g0878 Vra-Chr9 10396506 10398771 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra9g0878 17 622 WRKY Transcription Factor Family AT4G12020 28.201 1.11e-74 259
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra9g0878 - - vun:114165946 942.569